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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaacatctcaactcaatacagcgtgatttcggaatattgacgaaaacatgaaaagttaaaaaaggagtttgacttggtgtcagcttgttctcataacacttgtagagtagacaccacgtaaaaaccaagttgaagaagtattctgagacttatgtttgttattgttgcagGATCCGGTACCTCTTAATTGCACGACTTCTACGGTTGACTAGGTTGCTTGTGTTAGTTGAGCGGTACAAGGTTATGGTTGCCACGTTCTTCAAACTCATC

Basic information

species Physcomitrella patens
transcript PP1S45_277V6.2
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100405426|gb|BY955519.1|BY955519
EST:     TGGCCTTTTTCACTCCCGGTGATCTACCCTTTCT-CACCAATGACGAGCT                         GATCCGGTACCTCTTTATTGCACGACTTCTACGGTTGACTA
genomic: TGGCCTTTTTCACTCCCGGTGATCTACCCTT-CTTCACCAATGACGAGCTgtacaacatc ... attgttgcagGATCCGGTACCTCTTAATTGCACGACTTCTACGGTTGACTA
EST: gi|18335079|gb|BJ167097.1|BJ167097
EST:     CCTTCTTCACCAATGACGAGCT                         GATCCGGTACCTCTTAATTGCACGACTTCTACGGTTGACTAGGTTGCTTGT
genomic: CCTTCTTCACCAATGACGAGCTgtacaacatc ... attgttgcagGATCCGGTACCTCTTAATTGCACGACTTCTACGGTTGACTAGGTTGCTTGT
EST: gi|37851600|gb|BJ609608.1|BJ609608
EST:     TCACCAATGACGAGCT                         GATCCGGTACNTCTTAATTGCACGACTTCTACGGTTGACTAGGTTGCTTGT
genomic: TCACCAATGACGAGCTgtacaacatc ... attgttgcagGATCCGGTACCTCTTAATTGCACGACTTCTACGGTTGACTAGGTTGCTTGT
EST: gi|37850950|gb|BJ608958.1|BJ608958
EST:     TCTTCACCAATGACGAGCT                         GATCCGGTACNTCTTAATTGCACGACTTCTACGGTTGACTAGGTTGCTTGT
genomic: TCTTCACCAATGACGAGCTgtacaacatc ... attgttgcagGATCCGGTACCTCTTAATTGCACGACTTCTACGGTTGACTAGGTTGCTTGT
EST: gi|37848518|gb|BJ606526.1|BJ606526
EST:     AATGACGAGCT                         GATCCGGTACCTCTTAATTGCACGACTTCTACGGTTGACTAGGTTGCTTGT
genomic: AATGACGAGCTgtacaacatc ... attgttgcagGATCCGGTACCTCTTAATTGCACGACTTCTACGGTTGACTAGGTTGCTTGT
EST: gi|37853036|gb|BJ611044.1|BJ611044
EST:     CCAATGACGAGCT                         GATCCGGTACCTCTTAATTGCACGACTTCTACGGTTGACTAGGTTGCTTGT
genomic: CCAATGACGAGCTgtacaacatc ... attgttgcagGATCCGGTACCTCTTAATTGCACGACTTCTACGGTTGACTAGGTTGCTTGT
EST: gi|37850034|gb|BJ608042.1|BJ608042
EST:     -GCCNTTTTTCACTCCCCGGTGATCTACCCTTCTTCACCAATGACGAGCT                         GATCCGGTACCTCTTAATTGCACGACTTCTACGGTTGACTAGGTTGCTTGT
genomic: GGCC-TTTTTCACT-CCCGGTGATCTACCCTTCTTCACCAATGACGAGCTgtacaacatc ... attgttgcagGATCCGGTACCTCTTAATTGCACGACTTCTACGGTTGACTAGGTTGCTTGT
EST: gi|162241089|gb|FC414133.1|FC414133
EST:     GTGGCCTTTTTCACTCCCGGTGATCTACCCTTCTTCACCAATGACGAGCT                         GATCCGGTACCTCTTAATTGCACGACTTCTACGGTTGACTAGGTTGCTTGT
genomic: GTGGCCTTTTTCACTCCCGGTGATCTACCCTTCTTCACCAATGACGAGCTgtacaacatc ... attgttgcagGATCCGGTACCTCTTAATTGCACGACTTCTACGGTTGACTAGGTTGCTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgtaaaaaccaagttgaagaagtattctgagacttatgtttgttattgttgcagGATCCGGTACCTCTTAATTGCACGACTTCTACGGTTGACTAGGTTGCTTGTGTTAGTTGAGCGGTACAAGGTTATGGTTGCCACGTTCTTCAAACTCATC
                                  ttatgtttgttatt  TA-rich tract