Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttaaagaagatttcttcccctattcctcacaacacaaatattagttcctgtatactagttctgctgtgcttggtagaaacttcaattgaccactgcttgctggattctgtgcagTGGTTTCGGAGACCGTGGCCTTTTTCACTCCCGGTGATCTACCCTTCTTCACCAATGACGAGCT

Basic information

species Physcomitrella patens
transcript PP1S45_277V6.2
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100405426|gb|BY955519.1|BY955519
EST:     TTGGCGATCGGCTCAAAATCAATATGACTTCATCATTACCGTGATAATTG                         TGGTTTCGGAGACCGTGGCCTTTTTCACTCCCGGTGATCTACCCTTTCT-C
genomic: TTGGCGATCGGCTCAAAATCAATATGACTTCATCATTACCGTGATAATTGgtaggttaaa ... ttctgtgcagTGGTTTCGGAGACCGTGGCCTTTTTCACTCCCGGTGATCTACCCTT-CTTC
EST: gi|37850034|gb|BJ608042.1|BJ608042
EST:     GGCTCAAAATCAATATGACTTCATCATTACCGTGATAATNG                         TGGTTTCGGAGACCGT-GCCNTTTTTCACTCCCCGGTGATCTACCCTTCTT
genomic: GGCTCAAAATCAATATGACTTCATCATTACCGTGATAATTGgtaggttaaa ... ttctgtgcagTGGTTTCGGAGACCGTGGCC-TTTTTCACT-CCCGGTGATCTACCCTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgctgtgcttggtagaaacttcaattgaccactgcttgctggattctgtgcagTGGTTTCGGAGACCGTGGCCTTTTTCACTCCCGGTGATCTACCCTTCTTCACCAATGACGAGCT
                        aattgac  putative branch site (score: 3)
                     ttcaatt  TA-rich tract