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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaaggaagtttcctactgcgtgcacctcgatttttgtcttactggcttctgtgaaaatttagccgtggccatgatggtgaacttgattgcttcgaagttttgcagcagGTCACAGCGATGGCGTTCCGCGCTAGAAAGTTCTTCCTTCCGTTCCTCTTGCTGCACTTGTTGGTGTGGCCGGTTCGTCCAGTGCATCCGGCGCACACCA

Basic information

species Physcomitrella patens
transcript PP1S45_270V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67716675|gb|BJ966935.1|BJ966935
EST:     GCTTTCGTCCTCAGTGCTAGTCACCCTAGAATCACACAAATCCGCTTCAG                         GTCACAGCGATGGCGTTCCGCGCTAGAAAGTTCTTCCTTCCGTTCCTCTTG
genomic: GCTTTCGTCCTCAGTGCTAGTCACCCTAGAATCACACAAATCCGCTTCAGgcaaggaagt ... tttgcagcagGTCACAGCGATGGCGTTCCGCGCTAGAAAGTTCTTCCTTCCGTTCCTCTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatttagccgtggccatgatggtgaacttgattgcttcgaagttttgcagcagGTCACAGCGATGGCGTTCCGCGCTAGAAAGTTCTTCCTTCCGTTCCTCTTGCTGCACTTGTTGGTGTGGCCGGTTCGTCCAGTGCATCCGGCGCACACCA
                           acttgat  putative branch site (score: 5)
                                         aagtttt  TA-rich tract