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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCTGGATGCAATTCATTGTCACCTGCCGTCGGAGATCTCTTGGAACGATCAACGGGGGCGAGACCAGGAGCTTACATTGTGGACTTCGGTTTCAGAAgtgaggattgcaagtcagagaccagactgaaatgaagttatgtgttttatttgactgttcagtttatagacgaatttgtgcattgtgattttgtctctttgctgcactggccaagaagcattgaaacccttgcgcatgcag

Basic information

species Physcomitrella patens
transcript PP1S39_136V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208395676|gb|DC924198.1|DC924198
EST:     GGGGCGAGACCANGAG-NTACATTG-GGAATTCGGTTTCAGAA                         GTGATAAAGAAACATGGCAGCCCGAGTTGCTTTCGCAGTGTTGGTAGTCAC
genomic: GGGGCGAGACCAGGAGCTTACATTGTGGACTTCGGTTTCAGAAgtgaggattg ... gcgcatgcagGTGATAAAGAAACATGGCAGCCCGAGTTGCTTTCGCAGTGTTGGTAGTCAC
EST: gi|208377998|gb|DC906927.1|DC906927
EST:     ATCAACGGGGGCGAGACCAGGAGCTTACATTGTGGACTTCGGTTTCAGAA                         GTGATAAAGAAACATGGCAGCCCGAGTTGCTTTCGCAGTGTTGGTAGTCAC
genomic: ATCAACGGGGGCGAGACCAGGAGCTTACATTGTGGACTTCGGTTTCAGAAgtgaggattg ... gcgcatgcagGTGATAAAGAAACATGGCAGCCCGAGTTGCTTTCGCAGTGTTGGTAGTCAC
EST: gi|67718705|gb|BJ968964.1|BJ968964
EST:     ATCAACGGGGGCGAGACCAGGAGCTTACATTGTGGACTTCGGTTTCAGAA                         GTGATAAAGAAACATGGCAGCCCGAGTTGCTTTCGCAGTGTTGGTAGTCAC
genomic: ATCAACGGGGGCGAGACCAGGAGCTTACATTGTGGACTTCGGTTTCAGAAgtgaggattg ... gcgcatgcagGTGATAAAGAAACATGGCAGCCCGAGTTGCTTTCGCAGTGTTGGTAGTCAC
EST: gi|208351809|gb|DC910363.1|DC910363
EST:     ATCAACGGGGGCGAGACCAGGAGCTTACATTGTGGACTTCGGTTTCAGAA                         GTGATAAAGAAACATGGCAGCCCGAGTTGCTTTCGCAGTGTTGGTAGTCAC
genomic: ATCAACGGGGGCGAGACCAGGAGCTTACATTGTGGACTTCGGTTTCAGAAgtgaggattg ... gcgcatgcagGTGATAAAGAAACATGGCAGCCCGAGTTGCTTTCGCAGTGTTGGTAGTCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGCTGGATGCAATTCATTGTCACCTGCCGTCGGAGATCTCTTGGAACGATCAACGGGGGCGAGACCAGGAGCTTACATTGTGGACTTCGGTTTCAGAAgtgaggattgcaagtcagagaccagactgaaatgaagttatgtgttttatttgactgttcagtttatagacgaatttgtgcattgtgattttgtctctttgctgcactggccaagaagcattgaaacccttgcgcatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT