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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGGTTAAAGTTGAAGCTTCTTCCTTAAGGCCTGCGCTGTCGCACTATATGGAATGATGCTACTTGTTAAAGCTCGGAGTACGAGGCCGTCACAACATgtgagttatgatgcgcttctgcttgtagtgatgctcgctcctctaaaataagaccgtacagctttacaaaatacaccttgaaagctgaaactgggaggca...

Basic information

species Physcomitrella patens
transcript PP1S100_34V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18358718|gb|BJ190777.1|BJ190777
EST:     ATGGAATGATGCTACTTGTTAAAGCTCGGAGTACGAGGCCGTCACAACAT                         GTAGGACTATCGGCAATTGGCACCGGAAATGAG
genomic: ATGGAATGATGCTACTTGTTAAAGCTCGGAGTACGAGGCCGTCACAACATgtgagttatg ... gattgtaaagGTAGGACTATCGGCAATTGGCACCGGAAATGAG




















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAAGGTTAAAGTTGAAGCTTCTTCCTTAAGGCCTGCGCTGTCGCACTATATGGAATGATGCTACTTGTTAAAGCTCGGAGTACGAGGCCGTCACAACATgtgagttatgatgcgcttctgcttgtagtgatgctcgctcctctaaaataagaccgtacagctttacaaaatacaccttgaaagctgaaactgggaggca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataca