| 1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtataaattatggtaaaagctgaaaatttattttaacacaattgttgcctttttatgttgacaacctgacattattattcatttacctgttaaccattttttgtttaaaaaaatcattgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGGTAAATGCAC
| species | Glycine max |
| transcript | GLYMA06G18110.4 |
| intron # | 10 |
| splice site | 3' |
| intron type | U2 |
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCANAGGCTGGAATTGCATTGAATAAGAAACTT-GEST: gi|207839144|gb|GD809561.1|GD809561
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAA-CTTTG
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTT-ATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|24136619|gb|BU927129.1|BU927129
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAA-TNTTGEST: gi|193408917|gb|FK372823.1|FK372823
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACT-TTG
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTEST: gi|20497911|gb|BQ272841.1|BQ272841
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATT
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|31560882|gb|CD486720.1|CD486720
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGEST: gi|19054169|gb|BM732836.1|BM732836
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTG
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|16280511|gb|BI944000.1|BI944000
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCCAAGGCTGGAATTGCATTGAATAAGAAACTT-GEST: gi|16278605|gb|BI942990.1|BI942990
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAA-CTTTG
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|193345349|gb|FK312942.1|FK312942
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|193590425|gb|FK544455.1|FK544455
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|17401792|gb|BM178574.1|BM178574
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTEST: gi|208102481|gb|GD899658.1|GD899658
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTT
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGTATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGEST: gi|254322211|gb|GR837625.1|GR837625
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTG-ATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTG
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|48574825|gb|CO036096.1|CO036096
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|16281890|gb|BI944722.1|BI944722
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|208076691|gb|GD875620.1|GD875620
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTEST: gi|27445931|gb|CA953054.1|CA953054
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTT
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|27425391|gb|CA936911.1|CA936911
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|16279498|gb|BI943467.1|BI943467
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCACAGGCTTGAATTGCATTGAATAAGAACTTTGTEST: gi|24136374|gb|BU926884.1|BU926884
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|20498687|gb|BQ273617.1|BQ273617
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GTTACACTGAAGATGATGTGGGCTCCACTGACTTTATTCGG-GATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTTGCTTTGAAEST: gi|193320886|gb|FK286897.1|FK286897
genomic: GTTACACTGAAGATGATGTGGTCTCCACTGACTTTAT-CGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATT-GCATTGAA
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGNEST: gi|16278876|gb|BI943140.1|BI943140
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTGTGTEST: gi|21601528|gb|BQ611859.1|BQ611859
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|193541020|gb|FK495678.1|FK495678
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|16279470|gb|BI943453.1|BI943453
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACTGACTNTATCGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACTGACTTTATCGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
attattattcatttacctgttaaccattttttgtttaaaaaaatcattgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGGTAAATGCAC
tgttaac putative branch site (score: 2)
ttgttcc putative PPT
ttaaccattttttgtt TA-rich tract
| atgc | intron | ATGC | exonic elements by Pertea et al. |
| ATGC | exon | atgc | putative intronic elements |
| ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaattatggtaaaagctgaaaatttattttaacacaattgttgcctttttatgttgacaacctgacattattattcatttacctgttaaccattttttgtttaaaaaaatcattgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGGTAAATGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC