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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttaactttctttcttcaattcatgaattcaatgttcctatttttctcaatttaattgatcaaccaatagCTACCATTTCGATGGGACTACTCGCAAATTCTTCGAGGGTTGGTACTTCAAACTTTCCATTCCGGAACGGAGGCAGAGTTTTTGCTTCATGTACTCCGTC

Basic information

species Glycine max
transcript GLYMA06G08850.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08850.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S9_51V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------------------------gtatttaactttctttcttcaattcatgaattcaatgttcctatttttctcaatttaattgatcaaccaatagCTACCATTTCGATGGGACTACTCGCAAATTCTTCGAGGGTTGGTACTTCAAACTTTCCATTCCGGAACGGAGGCAGAGTTTTTGCTTCATGTACTCCGTC
                                 ||  || |||  || ||   | |     ||  ||||  ||| |||| |    |   || |||   |   || || ||||||||||| || | |||   ||||||||||||||||||||||||  | |||||||||||   ||  || ||||||   |  |||||| |    
ttcatagtttagatacttgtaaagtaggattaaatcaaattttgattttttgttactcatgtttcatgtagctaattttgt---atccttttatctttct-cagTTATCATTTCGATGGCACGAGTCGTCGATTCTTCGAGGGTTGGTACTTCAAGGTCTCCATTCCGGAGGTGAAACAAAGTTTTGCTTGGATGTACACGAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaattcatgaattcaatgttcctatttttctcaatttaattgatcaaccaatagCTACCATTTCGATGGGACTACTCGCAAATTCTTCGAGGGTTGGTACTTCAAACTTTCCATTCCGGAACGGAGGCAGAGTTTTTGCTTCATGTACTCCGTC
                                      aattgat  putative branch site (score: 4)
                       tatttttctcaattta  TA-rich tract