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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatcagttctaatgtttggttccattctttttgtattttagttaatttggacttttctctatttgagaatctatttgacgttgtcaaagcttgaa...

Basic information

species Glycine max
transcript GLYMA05G03770.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G03770.3 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os02g01030.3 (Oryza sativa), 5'ss of exon 9
GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatcagttcta--atgtttggttccattctttttgtattttagttaatttggacttttctctatttgagaatctatttgacgttgtcaaagcttgaa
|||||||| |||||||| |||||| |||| || ||||||||||| ||||||||||||||||    | |    |   || ||||         | ||    ||  |||   | || | |  | | | |     |    | |     || | |||       
GACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCAGCTCTTCAAGATGgtatgctttaacattggcatatttgtgatttacttgttcaagttccagtccctatgtagtactgtttctggataacatcaatcttttttattaaaaaacc--

upper sequence: GLYMA05G03770.3 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os02g01030.4 (Oryza sativa), 5'ss of exon 8
------------------------------------------GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatcagttcta--atgtttggttccattctttttgtattttagttaatttggacttttctctatttgagaatctatttgacgttgtcaaagcttgaa
                                          |||||||| |||||||| |||||| |||| || ||||||||||| ||||||||||||||||    | |    |   || ||||         | ||    ||  |||   | || | |  | | | |     |    | |     || | |||       
GATGACAGTCACTACACATGTATGTTTTTCCCTCTTCAACAGGACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCAGCTCTTCAAGATGgtatgctttaacattggcatatttgtgatttacttgttcaagttccagtccctatgtagtactgtttctggataacatcaatcttttttattaaaaaacc--

upper sequence: GLYMA05G03770.3 (Glycine max), 5'ss of exon 10
lower sequence: AT4G22670.1 (Arabidopsis thaliana), 5'ss of exon 9
GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatcagttctaatgtttggttccattctttttgtattttagttaatttggacttttctctatttgagaatctatttgacgttgtcaaagcttgaa
|| ||||| || ||| |||||||||| || || || || |||||||||||||||||||||| | ||  |    | | |   ||| || | | ||  | ||||  || | |   | |||||     ||||   |   ||  | | | | | ||      
GATCCTGAGCTAATGACGGCATTTAGCGACCCTGAAGTCATGGCTGCTCTTCAAGATGgta-tgat--gactcagtttaaagttgcagtttattaatgtttt--ttgaat---atttttcgagtcttgaatgttgtttgaatgctataacag------

upper sequence: GLYMA05G03770.3 (Glycine max), 5'ss of exon 10
lower sequence: PP1S9_386V6.1 (Physcomitrella patens), 5'ss of exon 10
GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatcagttctaatgtttggttccattctttttgtattttagttaatttggacttttctctatttgagaatctatttgacgttgtcaaagcttgaa--
||||| ||||| ||||| ||||||  |||||| || |||||||| |||||||||||||||| | || |  |||   | || |  |  | |  | | | |  | ||| || |      |      |||  |        || ||   ||||  |   ||  
GACCCAGAACTTATGGCTGCATTTTCTGATCCAGAAGTTATGGCAGCTCTTCAAGATGgta-tgatta-ctctttcgcttagaactgtgcgatgtttttaattgttgatctctgaactgaaggttttaggtcgaatgctggcgaattcaatccggaaaaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208079391|gb|GD877567.1|GD877567
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|193483098|gb|FK448435.1|FK448435
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|193537108|gb|FK498847.1|FK498847
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208312483|gb|GE110363.1|GE110363
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGT-G
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|193314938|gb|FK282110.1|FK282110
EST:     CTGATGGCGGCATTTAGTGATACCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: CTGATGGCGGCATTTAGTGAT-CCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208329340|gb|GE128468.1|GE128468
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208200541|gb|GD995156.1|GD995156
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208260275|gb|GE060641.1|GE060641
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|193537897|gb|FK495072.1|FK495072
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCATGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|193396570|gb|FK363710.1|FK363710
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208333883|gb|GE129952.1|GE129952
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208224137|gb|GE026208.1|GE026208
EST:     CTGATGGCGGCATTTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGC
genomic: CTGATGGCGGCATTT-AGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGC
EST: gi|208184481|gb|GD983795.1|GD983795
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCGCCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|193366907|gb|FK329073.1|FK329073
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTACTAATTTTGCCAAGCACCAATCAAAGTCCAAAGGTA
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAA-TCCAAAGGTA
EST: gi|193558220|gb|FK514115.1|FK514115
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTT-GCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208252396|gb|GE047850.1|GE047850
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|193558760|gb|FK510757.1|FK510757
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|207833131|gb|GD801808.1|GD801808
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208026085|gb|GD825631.1|GD825631
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGG
EST: gi|207809905|gb|GD781909.1|GD781909
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|193616128|gb|FK566920.1|FK566920
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|193624434|gb|FK574314.1|FK574314
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208091187|gb|GD890940.1|GD890940
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|193453738|gb|FK421138.1|FK421138
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|207782726|gb|GD752365.1|GD752365
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208226842|gb|GE027779.1|GE027779
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|207757237|gb|GD727619.1|GD727619
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|193567753|gb|FK526428.1|FK526428
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208204636|gb|GE001981.1|GE001981
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208222887|gb|GE027506.1|GE027506
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|193370410|gb|FK334060.1|FK334060
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTT-GCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|193558380|gb|FK513379.1|FK513379
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208265333|gb|GE064499.1|GE064499
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|193566488|gb|FK525009.1|FK525009
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|207815150|gb|GD787824.1|GD787824
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208142895|gb|GD942389.1|GD942389
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208191732|gb|GD991050.1|GD991050
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208197602|gb|GD999831.1|GD999831
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|193310461|gb|FK276289.1|FK276289
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCTAAAGGTA
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCC-AAAGGTA
EST: gi|193561062|gb|FK517635.1|FK517635
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208136424|gb|GD940168.1|GD940168
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|193528709|gb|FK485541.1|FK485541
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208237025|gb|GE034305.1|GE034305
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208100368|gb|GD898468.1|GD898468
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|207706922|gb|GD689010.1|GD689010
EST:     ACTGGTGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|193509996|gb|FK469364.1|FK469364
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|207749232|gb|GD720062.1|GD720062
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208041185|gb|GD840864.1|GD840864
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208154526|gb|GD958029.1|GD958029
EST:     CGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: CGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|193727958|gb|FK666688.1|FK666688
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|193387409|gb|FK349620.1|FK349620
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
EST: gi|208304500|gb|GE104371.1|GE104371
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAA
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAA
EST: gi|207782900|gb|GD754513.1|GD754513
EST:     ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATG                         TTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG
genomic: ACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatca ... ttttgtgcagTTATGAAGAACCCTGCTAATTTTGCCAAGCACCAATCAAATCCAAAGGTAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACCCTGAACTGATGGCGGCATTTAGTGATCCGGAGGTTATGGCTGCTCTTCAAGATGgtaattatcagttctaatgtttggttccattctttttgtattttagttaatttggacttttctctatttgagaatctatttgacgttgtcaaagcttgaa

- - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG