1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAGgtagctgcttgaaatatttctgaggccttttgtcctacaaagtctttctgagaccttgtttttcggccatatgttgtttagctgacagatatgaaggaca...
species | Zea mays |
transcript | GRMZM5G866758_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTCTAGTATAAG TGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCTEST: gi|101395308|gb|EB819584.1|EB819584
genomic: TTCTAGTATAAGgtagctgctt ... tatggatcagTGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCT
EST: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAG TGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCTEST: gi|211193824|gb|FL472434.1|FL472434
genomic: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAGgtagctgctt ... tatggatcagTGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCT
EST: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAG TGATGGAGCTGCTGCATTAGTTTTGGTGAGTGGGCAGAAGGCTCAAGAGCTEST: gi|31909501|gb|CD650950.1|CD650950
genomic: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAGgtagctgctt ... tatggatcagTGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCT
EST: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAG TGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCTEST: gi|18661821|gb|BM501596.1|BM501596
genomic: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAGgtagctgctt ... tatggatcagTGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCT
EST: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAG TGATGGAGCTGCTGC-TTAGTTTTEST: gi|93281704|gb|EB673968.1|EB673968
genomic: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAGgtagctgctt ... tatggatcagTGATGGAGCTGCTGCATTAGTTTT
EST: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAG TGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCTEST: gi|78087734|gb|DV516127.1|DV516127
genomic: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAGgtagctgctt ... tatggatcagTGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCT
EST: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAG TGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCTEST: gi|76921549|gb|DV168617.1|DV168617
genomic: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAGgtagctgctt ... tatggatcagTGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCT
EST: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAG TGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCTEST: gi|31909499|gb|CD650949.1|CD650949
genomic: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAGgtagctgctt ... tatggatcagTGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCT
EST: TACAGTTACAGCTGGAAATGCTTCTAGTATAAG TGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCTEST: gi|76284259|gb|DV023827.1|DV023827
genomic: TACAGTTACAGCTGGAAATGCTTCTAGTATAAGgtagctgctt ... tatggatcagTGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCT
EST: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAG TGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCTEST: gi|18654813|gb|BM499618.1|BM499618
genomic: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAGgtagctgctt ... tatggatcagTGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCT
EST: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAG TGATGGAGCTGCTGCEST: gi|87152006|gb|DY396795.1|DY396795
genomic: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAGgtagctgctt ... tatggatcagTGATGGAGCTGCTGC
EST: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAG TGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCEST: gi|149016999|gb|EE154316.2|EE154316
genomic: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAGgtagctgctt ... tatggatcagTGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGC
EST: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAG TGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCTEST: gi|29544660|gb|CB605040.1|CB605040
genomic: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAGgtagctgctt ... tatggatcagTGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCT
EST: TTCTAGTATAAG TGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCTEST: gi|32864390|gb|CF004072.1|CF004072
genomic: TTCTAGTATAAGgtagctgctt ... tatggatcagTGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCT
EST: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAG TGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCTEST: gi|22490195|gb|BU050118.1|BU050118
genomic: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAGgtagctgctt ... tatggatcagTGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCT
EST: TTCATTTATAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAG TGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCEST: gi|31353258|gb|CD437615.1|CD437615
genomic: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAGgtagctgctt ... tatggatcagTGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGC
EST: TTCAAGGAGAATGATGGTACAGTTACAGCTGGGAATGCTTCTAGTATAAG TGATGGAGCTGCTGCATTAGTTTTEST: gi|76017958|gb|DT945128.1|DT945128
genomic: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAGgtagctgctt ... tatggatcagTGATGGAGCTGCTGCATTAGTTTT
EST: TCAAGGGGAAGGGTGGTACAGTTACAGCGGGAAATGCTT-TTGTATTAAG TGATGGAGCTGCTGCATTAGTTTTAGTGAGGGGGCAGAAGGCTCAAGAGCEST: gi|32862142|gb|CF001824.1|CF001824
genomic: TCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTA-TAAGgtagctgctt ... tatggatcagTGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGC
EST: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAG TGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCT
genomic: TTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAGgtagctgctt ... tatggatcagTGATGGAGCTGCTGCATTAGTTTTAGTGAGTGGGCAGAAGGCTCAAGAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGACCCAGTAAAACTAAAGAAACTTCGCCCAAGTTTCAAGGAGAATGGTGGTACAGTTACAGCTGGAAATGCTTCTAGTATAAGgtagctgcttgaaatatttctgaggccttttgtcctacaaagtctttctgagaccttgtttttcggccatatgttgtttagctgacagatatgaaggaca
- - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA