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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTACGACAGCTCCAGCCCTTGCCATTCCAAAGGCTATATCAAATGCAGCTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatcggtctttccagcttcaatagtacttacatctgaagcacaaatttagacttaactgtacttgtcgacattggcag

Basic information

species Zea mays
transcript GRMZM5G860137_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G860137_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g02020.1 (Oryza sativa), 5'ss of exon 9
GTTTACGACAGCTCCAGCCCTTGCCATTCCAAAGGCTATATCAAATGCAGCTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatcggtctttccagcttcaatagtacttacatctgaagcacaaatttagacttaactg--tacttgtcgacattggcag
 ||||| ||  ||||||| ||||| |||||||||||| |||||||||| | ||| ||||||||||| ||||||||||||||  |||| || |||||||| ||| ||| | |   | | ||  ||  | |||||||||| |||||||   ||| |||||| |||||  ||||| | ||| ||| |||
ATTTACAACTACTCCAGCTCTTGCTATTCCAAAGGCTGTATCAAATGCGGGTCTCCAAACTTCACAAATAGATTATTATGAGATAAACGAAGCTTTCTCCgtatgttcttgtcttcttcaatttagacagtacttacacctgaagcgtgaatctagactgaactgcatacttctggactttgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71442413|gb|DR823463.1|DR823463
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTTTCT                         GTTGTTGCTATAGTTAATCAGAGGCTTTTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|78180536|gb|DV551029.1|DV551029
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|71426142|gb|DR807192.1|DR807192
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|93281947|gb|EB674211.1|EB674211
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|211211417|gb|FL472067.1|FL472067
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|149110542|gb|EE294180.2|EE294180
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTTTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|60353947|gb|DN220920.1|DN220920
EST:     CTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|110951057|gb|EE171162.1|EE171162
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|110202377|gb|EC884274.1|EC884274
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|149107170|gb|EE189057.2|EE189057
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|78544790|gb|DV622288.1|DV622288
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|71437289|gb|DR818339.1|DR818339
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|89760641|gb|DY688973.1|DY688973
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|71298332|gb|DR785147.1|DR785147
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTTTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|88748462|gb|DY532603.1|DY532603
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|37375775|gb|CF624352.1|CF624352
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|78544465|gb|DV621963.1|DV621963
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|6994169|gb|AW453383.1|AW453383
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|60353407|gb|DN220380.1|DN220380
EST:     AGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: AGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|211357448|gb|FL362295.1|FL362295
EST:     TATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: TATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|74232956|gb|DT640870.1|DT640870
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|6865254|gb|AW360604.1|AW360604
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|50322371|gb|CO517497.1|CO517497
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|149087111|gb|EE176650.2|EE176650
EST:     ACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: ACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
EST: gi|110939957|gb|EE160114.1|EE160114
EST:     CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCT                         GTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC
genomic: CTCTTCAAACTTCACAGATAGATTATTATGAAGTAAATGAGGCTTTCTCTgtaagttatc ... acattggcagGTTGTTGCTATAGCTAATCAGAGGCTTCTTGGTATCCCTTCC