1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATGgtaagtttccctgtgcttaattttggtggcatgtaatttggcagcgcaaagtacactggcttttctcactattgctaaatatttggcgtaaagtatactc...
species | Zea mays |
transcript | GRMZM5G845755_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATG ACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGGEST: gi|32846294|gb|CD985975.1|CD985975
genomic: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATGgtaagtttcc ... attcttgcagACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGG
EST: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATG ACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGGEST: gi|194717129|gb|FK934282.1|FK934282
genomic: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATGgtaagtttcc ... attcttgcagACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGG
EST: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATG ACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGGEST: gi|29945847|gb|CB815850.1|CB815850
genomic: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATGgtaagtttcc ... attcttgcagACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGG
EST: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATG ACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGGEST: gi|94476026|gb|EB704984.1|EB704984
genomic: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATGgtaagtttcc ... attcttgcagACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGG
EST: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATG ACACACCCATACTTCCACCAAGTGAGGGCTGCAGAGAACAGCAGGACGCGGEST: gi|60354727|gb|DN221700.1|DN221700
genomic: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATGgtaagtttcc ... attcttgcagACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGG
EST: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATG ACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGGEST: gi|32849734|gb|CD989415.1|CD989415
genomic: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATGgtaagtttcc ... attcttgcagACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGG
EST: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATG ACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGGEST: gi|60345260|gb|DN212233.1|DN212233
genomic: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATGgtaagtttcc ... attcttgcagACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGG
EST: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATG ACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGGEST: gi|4609748|gb|AI600587.1|AI600587
genomic: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATGgtaagtttcc ... attcttgcagACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGG
EST: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATG ACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGGEST: gi|60350778|gb|DN217751.1|DN217751
genomic: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATGgtaagtttcc ... attcttgcagACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGG
EST: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATG ACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGGEST: gi|61117731|gb|DN558692.1|DN558692
genomic: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATGgtaagtttcc ... attcttgcagACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGG
EST: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATG ACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGGEST: gi|61117730|gb|DN558691.1|DN558691
genomic: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATGgtaagtttcc ... attcttgcagACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGG
EST: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATG ACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGGEST: gi|61117732|gb|DN558693.1|DN558693
genomic: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATGgtaagtttcc ... attcttgcagACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGG
EST: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATG ACACACCCTTACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGGEST: gi|61117733|gb|DN558694.1|DN558694
genomic: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATGgtaagtttcc ... attcttgcagACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGG
EST: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATG ACACACCCTTACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGGEST: gi|148990947|gb|EE032376.2|EE032376
genomic: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATGgtaagtttcc ... attcttgcagACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGG
EST: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATG ACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGG
genomic: AGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATGgtaagtttcc ... attcttgcagACACACCCATACTTCCAACAAGTGAGGGCTGCAGAGAACAGCAGGACGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATGgtaagtttccctgtgcttaattttggtggcatgtaatttggcagcgcaaagtacactggcttttctcactattgctaaatatttggcgtaaagtatactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC