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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCCATATGGGAACTCTGTTTTCTTTAGTGTCCGTAAGATTGATGATCCAATAGGATTGCTACCTGGAAAAATTATTCTGGGAATCAACAAACGAGGGgtctgatctcaccatgcgatggaaacttcatattctttctgttaagtaaaactgatcttgaatttatgcatgaatgcag

Basic information

species Zea mays
transcript GRMZM2G423861_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G423861_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os04g57140.1 (Oryza sativa), 5'ss of exon 9
TCTTCCATATGGGAACTCTGTTTTCTTTAGTGTCCGTAAGATTGATGATCCAATAGGATTGCTACCTGGAAAAATTATTCTGGGAATCAACAAACGAGGGgtctgat--ctcaccatgcgatggaaacttcatattctttctgttaagtaaaactgatcttgaatttatgcatgaatgcag
|||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| |  ||||||||| ||| ||||||||||| |||||||||||||||||||  || ||||   | || |||    |||   ||||||  |  |  | || || |    ||| ||| | |||||||
TCTTCCATATGGGAACTCAGTTTTCTTCAGTGTCCGGAAGATTGATGATCCAATAGGACTTTTACCTGGAAGAATCATTCTGGGAATAAACAAACGAGGGgtctgatgcctaaccacatgttg-aaatgctatacgttttctgccagttttagctaatttctt-tttctgcgttaatgcag

upper sequence: GRMZM2G423861_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 10
TCTTCCATATGGGAACTCTGTTTTCTTTAGTGTCCGTAAGATTGATGATCCAATAGGATTGCTACCTGGAAAAATTATTCTGGGAATCAACAAACGAGGGgtctgatctcaccatgcgatggaaacttcatattctttctgttaagtaaaactgatcttgaatttatgcatgaat-gcag--------------------------------
 || || |||||||| || |||||||||||||| || |||||||||||||| || ||| |  | ||||||   || ||  |||| || || || ||||||||  |        ||   ||   ||  |     ||| |   ||  | |||  |||| ||  | ||||  ||  || |||                                 
ACTGCCTTATGGGAATTCGGTTTTCTTTAGTGTTCGCAAGATTGATGATCCCATTGGACTTTTGCCTGGACGGATCATCTTGGGCATTAATAAGCGAGGGgtgagtcagagttatattattataatgta----tctgtacatt--gcaaatttgatgtttgaattatagatctattgcaacagaacatgaatttgattgttcattctcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18383721|gb|BM416921.1|BM416921
EST:     GCTACCTGGAAAAATTATTCTGGGAATCAACAAACGAGGG                         G-TCACTTTTTCCGTCCAGTTCCCAAGGAATATCTTCATTCTGCAGAATTA
genomic: GCTACCTGGAAAAATTATTCTGGGAATCAACAAACGAGGGgtctgatctc ... atgaatgcagGTTCACTTTTTCCGTCCAGTTCCCAAGGAATATCTTCATTCTGCAGAATTA
EST: gi|18649769|gb|BM498588.1|BM498588
EST:     CTACCTGGAAAAATTATTCTGGGAATCAACAAACGAGGG                         GTTCACTTTTTCCGTCCAGTTCCCAAGGAATATCTTCATTCTGCAGAATTA
genomic: CTACCTGGAAAAATTATTCTGGGAATCAACAAACGAGGGgtctgatctc ... atgaatgcagGTTCACTTTTTCCGTCCAGTTCCCAAGGAATATCTTCATTCTGCAGAATTA