Sequence
atgc intronic sequence ATGC exonic sequenceACGCAGTGACAGACTCTGGGATGAACAAGAAGTGGGGTCGTTCGATAAAAGATGCCGTGAAAGCTGCCATTGAAGGTGGCGCTACCATTGTCCAACTGAGgttatctttcttgaaaacgaccaaagttcctctagtgattcagtctgtcttcattcgatttcgttgaccgtgctttgagtgtccaatgttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G401934_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os12g09000.1 (Oryza sativa), 5'ss of exon 8
ACGCAGTGACAGACTCTGGGATGAACAAGAAGTGGGGTCGTTCGATAAAAGATGCCGTGAAAGCTGCCATTGAAGGTGGCGCTACCATTGTCCAACTGAGgttatctttcttgaaaacgaccaaagttcctctagtgattcagtctgtcttcattcgatttcgttgaccgtgctttgagtgtcc--aatgttcag
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ATGCAGTGACAGACTCTGGGATGAACAAAAAGTGGGGTCGTTCAATCAAAGAAGCTGTGCAAGCTGCCATTGAAGGTGGCGCTACCATTGTACAACTGAGgtctgcctattgaaacacaatcatgatcttgcatgtaatgcaatcc--ctccattttatttttctgat-gcattttgggtgtttttgatttccag
upper sequence: GRMZM2G401934_T03 (Zea mays), 5'ss of exon 9
lower sequence: Vv12s0035g00320.t01 (Vitis vinifera), 5'ss of exon 8
ACGCAGTGACAGACTCTGGGATGAACAAGAAGTGGGGTCGTTCGATAAAAGATGCCGTGAAAGCTGCCATTGAAGGTGGCGCTACCATTGTCCAACTGAGgtt-atctttcttgaaaacgacca----aagttcc---tctagtgattcagtctgtcttcattcgatttcgttgaccgtgctttgagtgtccaatgttcag
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ATGCTGTTACAGATTCAGGGATGAATAAGAAGTGGGGTCGTTCCATTACAGAAGCTGTTAAAGCTGCCATAGAAGGTGGTGCTACCATTGTTCAGCTGAGgtttgtagctgttgataacattcattctgaattataaatttagtaggtttatgcactgtgaattataaatttagaaggtttattgaa-gtcatattttgttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71756626|gb|DR954563.1|DR954563EST: TGCCATTGAAGGTGGCGCTACCATTGTCCAACTGAG AGAAAAAGACGCCGAGACACGGGAGTTCTTGGAAGCTGCCAAGGCCTGTGT
genomic: TGCCATTGAAGGTGGCGCTACCATTGTCCAACTGAGgttatctttc ... caatgttcagAGAAAAAGACGCCGAGACACGGGAGTTCTTGGAAGCTGCCAAGGCCTGTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACGCAGTGACAGACTCTGGGATGAACAAGAAGTGGGGTCGTTCGATAAAAGATGCCGTGAAAGCTGCCATTGAAGGTGGCGCTACCATTGTCCAACTGAGgttatctttcttgaaaacgaccaaagttcctctagtgattcagtctgtcttcattcgatttcgttgaccgtgctttgagtgtccaatgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG