1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTGTTCATGATGTTGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttggattctgctggtctgaattttttgggggtatttctgtacaaattatacgctaattatgtattctgcatacctctatacag
species | Zea mays |
transcript | GRMZM2G174286_T03 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTCEST: gi|93284395|gb|EB676659.1|EB676659
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
EST: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTCEST: gi|149112907|gb|EE295706.2|EE295706
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
EST: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTCEST: gi|88754539|gb|DY538680.1|DY538680
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
EST: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTGGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTCEST: gi|5922262|gb|AW055551.1|AW055551
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
EST: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTCEST: gi|24765679|gb|CA400838.1|CA400838
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
EST: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTCEST: gi|71300276|gb|DR786208.1|DR786208
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
EST: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTCEST: gi|28985354|gb|CB350599.1|CB350599
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
EST: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTCEST: gi|88749638|gb|DY533779.1|DY533779
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
EST: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTGGGGTATGTGACTACCATATGC-TTTCTTTGTTTCTTGATCAGATGCGTEST: gi|78106688|gb|DV525106.1|DV525106
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTC-TTGTTTCTTGATCAGATGCGT
EST: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTCEST: gi|5739982|gb|AI947672.1|AI947672
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
EST: CTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTCEST: gi|6095420|gb|AW120087.1|AW120087
genomic: CTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
EST: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTCEST: gi|45846980|gb|CN070923.1|CN070923
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
EST: TGCAGCGTTTTCCTGTAGAATCCAAAGGAAGACGAAAGAAATTGCAGGAG GTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTCEST: gi|101383586|gb|EB813848.1|EB813848
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
EST: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTTGGGTATGTGACTACCATATGCTTTTCTTTTTTCTTGATCAGATGCGTCEST: gi|18174253|gb|BM349641.1|BM349641
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
EST: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTCEST: gi|67017793|gb|CO446542.1|CO446542
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
EST: GCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCANGGAG -TTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTEST: gi|67020535|gb|CO449284.1|CO449284
genomic: GCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCA-GGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGT
EST: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTCEST: gi|211179297|gb|FL465342.1|FL465342
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
EST: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTCEST: gi|37383767|gb|CF628916.1|CF628916
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
EST: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTCEST: gi|211215684|gb|FL434860.1|FL434860
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
EST: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTCEST: gi|31364203|gb|CD448558.1|CD448558
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
EST: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCACATGCGTCEST: gi|5757367|gb|AI964654.1|AI964654
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
EST: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAG GTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
genomic: TGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttg ... ctctatacagGTTGGGTATGTGACTACCATATGCTTTTCTTGTTTCTTGATCAGATGCGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTTCATGATGTTGCAGCGTTTTCCTGTAGAATCAAAAGGAAGACGAAAGAAATTGCAGGAGgtacgctttggattctgctggtctgaattttttgggggtatttctgtacaaattatacgctaattatgtattctgcatacctctatacag
- - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAA