Sequence
atgc intronic sequence ATGC exonic sequenceTATCATCATAATGGAAGCCCATGCTATCGGTGCCTCTTTCCAACTCCACCACCTGTGGCAGCCTGCCAGAGATGCTCAGACAGTGGTGTCCTTGGGGTTGgtaggtgacactgtagaagctcgtcattagtacggtggacaaaaacttatattttttgtcaacctgtttaaaattcatcaatctttgtttatatgatgtg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G157836_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g32460.1 (Oryza sativa), 5'ss of exon 8
TATCATCATAATGGAAGCCCATGCTATCGGTGCCTCTTTCCAACTCCACCACCTGTGGCAGCCTGCCAGAGATGCTCAGACAGTGGTGTCCTTGGGGTTGgtaggtgacactgtagaagctcgtcattagtacggtggacaaaaacttatattttttgtcaacctgtttaaaattcatcaatctttgtttatatgatgtg--
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-----------------TCCATGCTATCGATGCCTTTTCCCAAATCCACCACCAGTGGCAGCCTGCCAGAGATGCTCAGACAGTGGAGTTCTTGGGGTTGgtaagt-actgagtaaaatattaacgagtgcttcttggtcataacaata-acttcccagaaggggaaacataagttagaatatttattttaaattttgttca
upper sequence: GRMZM2G157836_T03 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA14G02410.1 (Glycine max), 5'ss of exon 7
TATCATCATAATGGAAGCCCATGCTATCGGTGCCTCTTTCCAACTCCACCACCTGTGGCAGCCTGCCAGAGATGCTCAGACAGTGGTGTCCTTGGGGTTGgtaggtgacactgtagaagctcgtcattagtacggtggacaaaaacttatattttttgtcaacctgtttaaaattcat-caatctttgtttatatgatgtg--------
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TACAATTACAATGGTGGTCCTTGCTATCGATGCCTCTTTCCAACTCCACCACCTAGAACAGCATGCCAAAGTTGTGCTGAGGGTGGAGTTCTAGGA----GTAGgtaaaattacta----ctgtcttt-gtgaactgcatcagttttacttctcattgctagtctgcgagacatttacataagcatgaacaatgtgaaccataagacta
upper sequence: GRMZM2G157836_T03 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA02G46300.1 (Glycine max), 5'ss of exon 8
TATCATCATAATGGAAGCCCATGCTATCGGTGCCTCTTTCCAACTCCACCACCTGTGGCAGCCTGCCAGAGATGCTCAGACAGTGGTGTCCTTGGGGTTGgtaggtgacactgta-----gaagctcgtcattagtacggtggacaaaaacttatattttttgtcaacctgtttaaaattca-tcaatctttgtttatatgatgtg
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TACAATTACAATGGTGGTCCTTGCTATCGGTGCCTCTTTCCAACTCCACCACCTAGAACAGCATGCCAAAGTTGTGCTGAGGGTGGAGTTCTAGGAGTAGgtaatttctactgtttttgtgaactgcatcagttttac--ttctcaatgagaagttctcattgctagtttgggcgacatttacttgaacaatgccaaccata----
upper sequence: GRMZM2G157836_T03 (Zea mays), 5'ss of exon 9
lower sequence: Vv19s0090g01020.t01 (Vitis vinifera), 5'ss of exon 8
TATCATCATAATGGAAGCCCATGCTATCGGTGCCTCTTTCCAACTCCACCACCTGTGGCAGCCTGCCAGAGATGCTCAGACAGTGGTGTCCTTGGGGTTGgtaggtgacactgtaga-agctcgtcattagtacggtggacaaaaacttatattttttgtcaacctgtttaaaattcatcaatctttgtttatatgatgtg--
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TACAATTACAAAGGAGGTCCATGCTATCGGTGCCTTTTTCCTACTCCACCACCAACAACAGCATGTCAAAGATGTTCAGATAGTGGAGTTTTAGGAGTAGgtaagctgcagttttgctaacatgtccaatattaaattactagtctgctaacttgcctaccaaaccttgtaaaata---tgatcttgagagggatcttttcctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71442271|gb|DR823321.1|DR823321EST: GACAGTGGTGTCCTTGGGGTTG TTCCGGGAGTGATTGGTTGCTTACAAGCTCTGGAGGCTATAAAGGTTGCAA
genomic: GACAGTGGTGTCCTTGGGGTTGgtaggtgaca ... cgtttactagTTCCGGGAGTGATTGGTTGCTTACAAGCTCTGGAGGCTATAAAGGTTGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATCATCATAATGGAAGCCCATGCTATCGGTGCCTCTTTCCAACTCCACCACCTGTGGCAGCCTGCCAGAGATGCTCAGACAGTGGTGTCCTTGGGGTTGgtaggtgacactgtagaagctcgtcattagtacggtggacaaaaacttatattttttgtcaacctgtttaaaattcatcaatctttgtttatatgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacaaaaa