1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CATTGTTATGGATGATGCAGATATCCAGCTAGCTGTGCGATCTGTCTTGTTCGCTGCTGTTGGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatttttcttttgtttctcttttccgtatagtggttcgttttcaatttgtttaattgtctttcccatcttattacag
species | Zea mays |
transcript | GRMZM2G130440_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCGCTGCTGTTGGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|32922323|gb|CF027135.1|CF027135
genomic: TCGCTGCTGTTGGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: ACAGCAGGACAACGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGC-TGNCTGAGGTEST: gi|32922524|gb|CF027336.1|CF027336
genomic: ACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTG-TTGAGGT
EST: TACAGCAGGACAACGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|32923501|gb|CF028313.1|CF028313
genomic: TACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: CTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|60397385|gb|DN230201.1|DN230201
genomic: CTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: TCGCTGCTGTTGGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|18659627|gb|BM500437.1|BM500437
genomic: TCGCTGCTGTTGGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: TCGCTGCTGTTGGTACAGCAGGACAACGCTGCACTACATGTCGTAAGCTG AATCCTCATGAGAACATATATCAAAEST: gi|32923528|gb|CF028340.1|CF028340
genomic: TCGCTGCTGTTGGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAA
EST: TACAGCAGGACAACGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGTTTGTTGAGGTAEST: gi|32833586|gb|CD973264.1|CD973264
genomic: TACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: GGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|32844476|gb|CD984157.1|CD984157
genomic: GGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: ACAGCAGGACAACGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGGACATATATCAAACCTTCCTTGATCAGCTTGGTGAGGTAEST: gi|33099261|gb|CF059221.1|CF059221
genomic: ACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: ACAGCAGGACAACGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|5895823|gb|AW037069.1|AW037069
genomic: ACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: TCGCTGCTGTTGGTACAGCAGGACGGCGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|32845522|gb|CD985203.1|CD985203
genomic: TCGCTGCTGTTGGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: ACAGCAGGACAACGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGGACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|32828428|gb|CD968106.1|CD968106
genomic: ACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: ATGTCGTAGGCTG ATTCTTCATGAG-ACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|32923608|gb|CF028420.1|CF028420
genomic: ATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: TACAGCAGGACAACGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|32922556|gb|CF027368.1|CF027368
genomic: TACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: ACAGCAGGACAACGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|67034827|gb|CO463360.1|CO463360
genomic: ACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: TCGCTGCTGTTGGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|67026004|gb|CO454753.1|CO454753
genomic: TCGCTGCTGTTGGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: TCGCTGCTGTTGGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|211364319|gb|FL429344.1|FL429344
genomic: TCGCTGCTGTTGGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: TCGCTGCTGTTGGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|8102664|gb|AW927311.1|AW927311
genomic: TCGCTGCTGTTGGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: TCGCTGCTGTTGGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|213168098|gb|FM193492.1|FM193492
genomic: TCGCTGCTGTTGGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: TCGCTGCTGTTGGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|32835746|gb|CD975424.1|CD975424
genomic: TCGCTGCTGTTGGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: ACAGCAGGACAACGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|32922276|gb|CF027088.1|CF027088
genomic: ACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: ACAGCAGGACAACGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|32923568|gb|CF028380.1|CF028380
genomic: ACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: CACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|32923279|gb|CF028091.1|CF028091
genomic: CACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: TACAGCAGGACAACGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTAEST: gi|33099158|gb|CF059118.1|CF059118
genomic: TACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
EST: TACAGCAGTACATCGCTGCACTACATGTCGTAGGCTG ATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
genomic: TACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatt ... cttattacagATTCTTCATGAGAACATATATCAAACCTTCCTTGATCAGCTTGTTGAGGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTGTTATGGATGATGCAGATATCCAGCTAGCTGTGCGATCTGTCTTGTTCGCTGCTGTTGGTACAGCAGGACAACGCTGCACTACATGTCGTAGGCTGgtatggtatttttcttttgtttctcttttccgtatagtggttcgttttcaatttgtttaattgtctttcccatcttattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT