1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TCCTGATTTCTTGAATGCCAAAATTGATGGAAGACCAGTGAAAGAAGTCATTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcctctccctgtttgcaatatgtttggtgttgcctgtcactcgagaaattaagtcaagactgcaccataatttattctgttcatatatctaaacag
species | Zea mays |
transcript | GRMZM2G129513_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAG CGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACCEST: gi|110219294|gb|EC901192.1|EC901192
genomic: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcct ... atctaaacagCGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACC
EST: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAG CGTGGAGGTGTGTTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACCEST: gi|78089786|gb|DV518160.1|DV518160
genomic: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcct ... atctaaacagCGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACC
EST: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAG CGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACCEST: gi|32916975|gb|CF021787.1|CF021787
genomic: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcct ... atctaaacagCGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACC
EST: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAG CGTGGAGGTGTACTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACCEST: gi|211195515|gb|FL441324.1|FL441324
genomic: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcct ... atctaaacagCGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACC
EST: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAG CGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACCEST: gi|13198702|gb|BG354504.1|BG354504
genomic: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcct ... atctaaacagCGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACC
EST: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAG CGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACCEST: gi|32825533|gb|CD965255.1|CD965255
genomic: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcct ... atctaaacagCGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACC
EST: TAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAG CGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACCEST: gi|148971653|gb|EE022376.2|EE022376
genomic: TAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcct ... atctaaacagCGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACC
EST: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAG CGTGGAGGTGTGTTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACCEST: gi|211178869|gb|FL449312.1|FL449312
genomic: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcct ... atctaaacagCGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACC
EST: AGTTCACCCTCACAGTTCAAAAG CGTGGAGGTGTGCTCATCC-AAAATGGGGGCAGATCATCAGCTGCATCGACEST: gi|15590379|gb|BI674995.1|BI674995
genomic: AGTTCACCCTCACAGTTCAAAAGgtatgtgcct ... atctaaacagCGTGGAGGTGTGCTCATCCAAAAAT-GGGGCAGATCATCAGCTGCATCGAC
EST: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAG CGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACCEST: gi|148928691|gb|EC873304.2|EC873304
genomic: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcct ... atctaaacagCGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACC
EST: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAG CGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACCEST: gi|211129427|gb|FL299354.1|FL299354
genomic: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcct ... atctaaacagCGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACC
EST: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAG CGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACCEST: gi|211195516|gb|FL441325.1|FL441325
genomic: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcct ... atctaaacagCGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACC
EST: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAG CGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACCEST: gi|32791146|gb|CD943382.1|CD943382
genomic: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcct ... atctaaacagCGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACC
EST: TAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAG CGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGAGCEST: gi|30706123|gb|CD059034.1|CD059034
genomic: TAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcct ... atctaaacagCGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACC
EST: TTAAGGATACCCAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAG CGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACCEST: gi|74239371|gb|DT647285.1|DT647285
genomic: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcct ... atctaaacagCGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACC
EST: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAG CGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACCEST: gi|13558383|gb|BG549739.1|BG549739
genomic: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcct ... atctaaacagCGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACC
EST: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAG CGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACCEST: gi|13490961|gb|BG517725.1|BG517725
genomic: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcct ... atctaaacagCGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACC
EST: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAG CGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACCEST: gi|12968102|gb|BG265049.1|BG265049
genomic: TTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcct ... atctaaacagCGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACC
EST: GGAAGAGTTCACCCTCACAGTTCAAAAG CGTGGAGGTGTGCTCATCCAAAAATGGGGCAGTTCATCAGCTGCATCGACC
genomic: GGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcct ... atctaaacagCGTGGAGGTGTGCTCATCCAAAAATGGGGCAGATCATCAGCTGCATCGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTGATTTCTTGAATGCCAAAATTGATGGAAGACCAGTGAAAGAAGTCATTAAGGATACCAAGTGGTTAGAGGAAGAGTTCACCCTCACAGTTCAAAAGgtatgtgcctctccctgtttgcaatatgtttggtgttgcctgtcactcgagaaattaagtcaagactgcaccataatttattctgttcatatatctaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA