1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CATTAAAGATACAAACGATACATATGGGTTGTATCATCTAGCCAAAATTGCATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAGgttagtttagaaaattgttatattacctgatattgttgtgaaatctcgattggtaatctcagaatgttatgacaagttcattttatctctgggcaagcag
species | Zea mays |
transcript | GRMZM2G100454_T03 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAG GTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCCCGAEST: gi|24766283|gb|CA401438.1|CA401438
genomic: CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAGgttagtttag ... gggcaagcagGTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGA
EST: CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAG GTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGAEST: gi|76910149|gb|DV163727.1|DV163727
genomic: CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAGgttagtttag ... gggcaagcagGTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGA
EST: CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAG GTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGAEST: gi|32930838|gb|CF035650.1|CF035650
genomic: CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAGgttagtttag ... gggcaagcagGTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGA
EST: CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAG GTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGAEST: gi|42491831|gb|CK700877.1|CK700877
genomic: CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAGgttagtttag ... gggcaagcagGTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGA
EST: ATATCNTTTGTGCCAGGCCAAACCCNNAGCAGCGGCCTTCTATGGGAGAG GTTGTTCGCCTTATTGAGATAGAAACTGAGCATATCAGGGATTTGTCACGAEST: gi|32931339|gb|CF036151.1|CF036151
genomic: ATATC-TTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAGgttagtttag ... gggcaagcagGTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGA
EST: CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAG GTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGAEST: gi|40287084|gb|CK327476.1|CK327476
genomic: CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAGgttagtttag ... gggcaagcagGTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGA
EST: CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAG GTTGTTCGCCTTATTGAGATAGAAACTGAGCATATCAGGGATTTGTCACGA
genomic: CATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAGgttagtttag ... gggcaagcagGTTGTTCGCCTTATTGAGATAGAAACTGAACATATCAGGGATTTGTCACGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTAAAGATACAAACGATACATATGGGTTGTATCATCTAGCCAAAATTGCATATCTTTGTGCCAGGCCAAACCCAGAGCAGCGGCCTTCTATGGGAGAGgttagtttagaaaattgttatattacctgatattgttgtgaaatctcgattggtaatctcagaatgttatgacaagttcattttatctctgggcaagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG