1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGAAGTTGACATgtaagtgttctcaagcattttttttctagtagatcgctacagtagatttctgtctgtttattttataattttgctattgtcatcattgcaactgtataaa...
species | Zea mays |
transcript | GRMZM2G079538_T03 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ACATTTAATGAAGTTGACAT GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAAEST: gi|148950981|gb|EC896624.2|EC896624
genomic: ACATTTAATGAAGTTGACATgtaagtgttc ... tattatgcagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: ATTCTCAGAACACCTTTGCAATGCTGAGTACATTTTAATGAAGT-GACAT GACCAATTTGATGAAGCTTCGTTCTGATAA-AAAGATGAATTTGTCACAAAEST: gi|211169880|gb|FL077609.1|FL077609
genomic: ATTCTCAGAACACCTTTGCAATGCTGAGTACATTT-AATGAAGTTGACATgtaagtgttc ... tattatgcagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: GATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGAAGTTGACAT GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAAEST: gi|32830086|gb|CD969764.1|CD969764
genomic: GATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGAAGTTGACATgtaagtgttc ... tattatgcagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: ACATTTAATGAAGTTGACAT GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAAEST: gi|31355590|gb|CD439947.1|CD439947
genomic: ACATTTAATGAAGTTGACATgtaagtgttc ... tattatgcagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: GATTCTCAGAACACCTTTGCTATGCTGAGTACATTTAATGAAGTTGACAT GACCAATTTTGATGA-GCTTCGTTCTGATTATAAAGAEST: gi|13558100|gb|BG549456.1|BG549456
genomic: GATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGAAGTTGACATgtaagtgttc ... tattatgcagGACCAATTT-GATGAAGCTTCGTTCTGATTATAAAGA
EST: ATTCTCAGAACACCTTTGCAATGTTGTGTTACATTTAATGAAGTTGACAT GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAAEST: gi|32942914|gb|CF047733.1|CF047733
genomic: ATTCTCAGAACACCTTTGCAATGCTGAG-TACATTTAATGAAGTTGACATgtaagtgttc ... tattatgcagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: GAAGTTGACAT GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAAEST: gi|60358853|gb|DN225826.1|DN225826
genomic: GAAGTTGACATgtaagtgttc ... tattatgcagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: GTACATTTAATGAAGTTGACAT GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAAEST: gi|6227238|gb|AW155837.1|AW155837
genomic: GTACATTTAATGAAGTTGACATgtaagtgttc ... tattatgcagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: GATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGAAGTTGACAT GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAAEST: gi|32829046|gb|CD968724.1|CD968724
genomic: GATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGAAGTTGACATgtaagtgttc ... tattatgcagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: ACATTTAATGAAGTTGACAT GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAAEST: gi|32828877|gb|CD968555.1|CD968555
genomic: ACATTTAATGAAGTTGACATgtaagtgttc ... tattatgcagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: ACATTTAATGAAGTTGACAT GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAAEST: gi|211169873|gb|FL077602.1|FL077602
genomic: ACATTTAATGAAGTTGACATgtaagtgttc ... tattatgcagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: GATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGAAGTTGACAT GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAAEST: gi|7145229|gb|AW506710.1|AW506710
genomic: GATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGAAGTTGACATgtaagtgttc ... tattatgcagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: GATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGAAGTTGACAT GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAAEST: gi|13558537|gb|BG549893.1|BG549893
genomic: GATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGAAGTTGACATgtaagtgttc ... tattatgcagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: ATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGTTGTTTGACAT GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAEST: gi|32867030|gb|CF006712.1|CF006712
genomic: ATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGAAG-TTGACATgtaagtgttc ... tattatgcagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAA
EST: GATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGAAGTTGACAT GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAAEST: gi|67019048|gb|CO447797.1|CO447797
genomic: GATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGAAGTTGACATgtaagtgttc ... tattatgcagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
EST: GATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGAAGTTGACAT GACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
genomic: GATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGAAGTTGACATgtaagtgttc ... tattatgcagGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGAATTTGTCACAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCCAATGCCAAGGCTCAGGAAGCGTATTGCAAACCGTCTTAAGGATTCTCAGAACACCTTTGCAATGCTGAGTACATTTAATGAAGTTGACATgtaagtgttctcaagcattttttttctagtagatcgctacagtagatttctgtctgtttattttataattttgctattgtcatcattgcaactgtataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG