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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGAGGAGAGCAGCGATGACTTGGCTAACCCACCGAAGGTAGAGGAGAAGCTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcatagccttctgccaatcagtgttggttgttactgtcttgtcatattatcgatacttttatgaacaatatgattttgttgcgtgcag

Basic information

species Zea mays
transcript GRMZM2G063988_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063988_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA17G37820.1 (Glycine max), 5'ss of exon 2
-CCGAGGAGAGCAGCGATGACTTGGCTAACCCACCGAAGGTAGAGGAGAAGCTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcatagccttctgccaatcagtgttggttgttactgtcttgtcatattatcgatacttttatgaacaatatgattttgttgcgtgcag
 ||||||       ||| ||  | |   | || |||||||| ||||| ||| | |||||||| ||||||||||| |||||||| || || || | | ||||||| || | |  |  |     ||  | ||   | ||  | |||||     ||   | |   |  | | ||    || | ||||    |||| 
GCCGAGGGAGATTCCGACGAGCTTGTAGATCCTCCGAAGGTGGAGGACAAGATCGGTGCTGTGCCTCATGGCCTTTCCACCGATTCAGATGTCGTCAAGAggtgtgcgttgtttgat----ttctcttttttctattgttctcttg-----tttctggtgtctaaacgcacg-cgtgttgttgtgat-tgcaa