Sequence
atgc intronic sequence ATGC exonic sequenceTCTTGCAATGGGCAAAGTTGATCAGCATCATCCAGATCTGGCAATAGACCCCCTTGGAATTTTACGCCCTCCAAGCAAGTTGAATCATCAGCTTCCTCTGgtcagttaatctgccatggttttggtaccctttttgctctggtcatattctgaacaatggtgttgcttgtgcttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G043509_T03 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os10g27230.2 (Oryza sativa), 5'ss of exon 9
TCTTGCAATGGGCAAAGTTGATCAGCATCATCCAGATCTGGCAATAGACCCCCTTGGAATTTTACGCCCTCCAAGCAAGTTGAATCATCAGCTTCCTCTGgtcagttaatctgccatggttt--tggtaccctttttgctctggtcata---ttctgaacaatggtgttgcttgtgcttag
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TCTTGCTATGGGCAAAGTTGATCAATTGCATCCAGATCTGGCCATAGATCCCCTTGGAATTTTACGCCCTGCGAGCAAGTTAACCCATCAGCTTCCTCTGgtacagtaaaatatattggtctggtgatcccttttatcccatgatcaaagaactcttaccaagggtcttgcttgtttgtag
upper sequence: GRMZM2G043509_T03 (Zea mays), 5'ss of exon 10
lower sequence: Vv08s0007g07020.t01 (Vitis vinifera), 5'ss of exon 9
TCTTGCAATGGGCAAAGTTGATCAGCATCATCCAGATCTGGCAATAGACCCCCTTGGAATTTTACGCCCTCCAAGCAAGTTGAATCATCAGCTTCCTCTGgtcagttaatctgccatggttttggtaccctttttgctc-----tggtcatattctgaacaatggtgttgc-ttgtgcttag-------------------------------------------------------------
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TCTTGCGATGGGAAAAGTGGATCCAATGCATCCAGATTTAGCAATAGACCCTCTTGGAATTTTGCGCCCTGCCAGCAAGCTAACACATCAGCTGCCTCTGgtaaacttattgtttatcattgcatggctttaagtgattaagattgatcaaatgggcagaagggacaaggcattgagatttgtattaataaatgatgtttgctttgcgtggcttgtgatggttgtgacactgtgttgttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32807360|gb|CD959594.1|CD959594EST: CCCTTGGAATTTTACGCCCTCCAAGCAAGTTGAATCATCAGCTTCCTCTG GTCAGTGCATACTCTGCATTTGCAAGAATGGTGGGTGTTGGCTATGATTTG
genomic: CCCTTGGAATTTTACGCCCTCCAAGCAAGTTGAATCATCAGCTTCCTCTGgtcagttaat ... ttgtgcttagGTCAGTGCATACTCTGCATTTGCAAGAATGGTAGGTGTTGGCTATGATTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTGCAATGGGCAAAGTTGATCAGCATCATCCAGATCTGGCAATAGACCCCCTTGGAATTTTACGCCCTCCAAGCAAGTTGAATCATCAGCTTCCTCTGgtcagttaatctgccatggttttggtaccctttttgctctggtcatattctgaacaatggtgttgcttgtgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT