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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGTTATTGAGGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAATCTATCATACACTCTATGGTTGAAACCCAGgtgagccctgaaccatggttgtatcttttactaaaacgcacatgttgaggtattctacccagatgtagtgctttgtacactaacatatccatgcttaatc...

Basic information

species Zea mays
transcript GRMZM2G036290_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036290_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g01710.1 (Oryza sativa), 5'ss of exon 9
AGAAGTTATTGAGGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAATCTATCATACACTCTATGGTTGAAACCCAGgtgagccctgaaccatggttgtatcttttactaaaacgcacatgttgaggtattctacccagatgtagtgctttgtacact---aacatatccatgcttaatc--------------------------------------------------------------------------------
|||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||  | ||  | | |               | | ||||| ||   || | | ||  || ||||  || || |||   ||   || ||  |||||||                                                                                
AGAAGTTATTGAAGCACATTATTTATTTGGTGCTGAATACGATGACATTGAAATTGTGATCCACCCACAATCTATCATACACTCTATGATTGAAACCCAGgtgagtcctacagcacagctatg--------------gaaaatgtttagcggttatgctcaactgcagtggattttaaactgttaatgcatgcacacttaatcctgatatggcaaccgtattttcatgtttacgtttggcttaatattttttttcaagtattcatgaagttctgtttctccag

upper sequence: GRMZM2G036290_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA05G02190.1 (Glycine max), 5'ss of exon 9
AGAAGTTATTGAGGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAATCTATCATACACTCTATGGTTGAAACCCAGgtgagccctgaaccatggttgtatcttttactaaaacgcacatgttgaggtat-tctacccagatgtag-tgctttgtacactaacatatccatgcttaatc----
|||||| ||||| |||||||| || ||||| ||||| || ||| | ||||||||||| ||||| |||||||| |||||||| || ||| ||||||| |||||     || || | |  || ||| || |  |      | ||| || |  |   | ||    |||| |  ||  |     || |   || | |      |      
AGAAGTAATTGAAGCACATTACTTGTTTGGAGCTGACTACGATCATATTGAGATTGTCATTCATCCACAATCAATCATACATTCAATGATTGAAACACAGgt-----ctaaatc-taattctatgttatgttggttaccgcattttaatatccatatatttggatgcaaatggatgaggaaccatagtacctacaagctacaagtt

upper sequence: GRMZM2G036290_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA17G09740.1 (Glycine max), 5'ss of exon 9
AGAAGTTATTGAGGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAATCTATCATACACTCTATGGTTGAAACCCAGgtg-agccctgaaccatggttgtatcttttac----taaaacgcacatgttgaggtattctacccagatgtagtgctttgtacactaacatatccatgcttaatc
|||||| ||||| |||||||| || ||||| ||||| |||||| | ||||||||||| ||||| |||||||| |||||||| || ||| ||||||| |||||  |  ||| |  |   ||| | | |  | |    | | |  || || ||  | ||    |    ||||  |  |  |   || || ||  | || | |  |  
AGAAGTAATTGAAGCACATTACTTGTTTGGAGCTGACTATGATCATATTGAGATTGTCATTCATCCACAATCAATCATACATTCAATGATTGAAACACAGgtataaaccttattctatgttatgtttactgcattttgatatccatatattcggatac---aaatggatgaggaaccatagcca-tagcacctacaagttccag-

upper sequence: GRMZM2G036290_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv17s0000g08390.t01 (Vitis vinifera), 5'ss of exon 9
AGAAGTTATTGAGGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAATCTATCATACACTCTATGGTTGAAACCCAGgtgagccctgaacc-atggttgtatcttttactaaa-acgcacatgttgaggtattctacccaga---tgtagtgctttgtacactaacatatccatgcttaatc-----------------
|||||||||||| ||||| ||| | ||||| |||||||||||||| ||||||||  | ||||| ||||||||||||||||| |||||||| ||||| ||||| |    | | |  || ||  |  ||| | || || | |   | | ||    || | | |   |   | |  |  ||| || |      |    |||  |  ||                 
AGAAGTTATTGAAGCACACTATCTGTTTGGGGCTGAATATGATGATATTGAGATCATAATTCATCCACAATCTATCATACATTCTATGGTCGAAACACAGgttaattgttatcttattgtcttggcttcttcttaatatgtttaagatgtcaaataccatcagaactgtttcatattttttagaagcggtttcttatgtcttctccacccctttctctccag

upper sequence: GRMZM2G036290_T01 (Zea mays), 5'ss of exon 9
lower sequence: EFJ09183 (Selaginella moellendorffii), 5'ss of exon 10
AGAAGTTATTGAGGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAATCTATCATACACTCTATGGTTGAAACCCAGgtgagccctgaaccatggttgtatcttttactaaaacgcacatgttgaggtattctacccagatgtagtgctttgtacactaacatatccatgcttaatc
 || || ||||| || || ||||| ||||| ||||| |||||||||||||| ||||| || || || ||||| || |||||||| ||| | || || ||||| |    |||      |||| ||  || |     || ||||   | |   |  |||  || ||  ||                                
CGAGGTCATTGAAGCTCACTATTTGTTTGGAGCTGACTATGATGACATTGACATTGTTATCCATCCCCAATCGATTATACACTCCATGATCGAGACACAGgtaa--tatga------gttgaatgcttca-----acacaca-actaacacag-ctagtcaaatacag--------------------------------

upper sequence: GRMZM2G036290_T01 (Zea mays), 5'ss of exon 9
lower sequence: EFJ07179 (Selaginella moellendorffii), 5'ss of exon 10
AGAAGTTATTGAGGCACATTATTTATTTGGTGCTGAATATGATGACATTGAGATTGTGATTCACCCACAATCTATCATACACTCTATGGTTGAAACCCAGgtgagccctgaaccatggttgtatcttttactaaaacgcacatgttgaggtattctacccagatgtagtgctttgtacactaacatatccatgcttaatc
 || || ||||| || || ||||| ||||| ||||| |||||||||||||| ||||| || || || ||||| || |||||||| ||| | || || ||||| |    |||      |||| ||  || |     || ||||   | |   |  |||  || ||  ||                                
CGAGGTCATTGAAGCTCACTATTTGTTTGGAGCTGACTATGATGACATTGACATTGTTATCCATCCCCAATCCATTATACACTCCATGATCGAGACACAGgtaa--tatga------gttgaatgcttca-----acacaca-actaacacag-ctagtcaaatacag--------------------------------