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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgtttattttctaatttaattgttatcgagttgttgtacctgccctcacatcaaaatctgagtattgtttgcctaagtaaaccttctcactctgtatatatctcgggcatatttcccaatgggtgtttttgttgatgagcagaggttttggctatctaaactcagaagtcctgttgtgcag

Basic information

species Zea mays
transcript GRMZM2G035150_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G035150_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g64219.1 (Oryza sativa), 5'ss of exon 8
TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgtttattttctaatttaattgttatcgagttgttgtacctgccctcacatcaaaatctgagtattgtttgcctaagtaaaccttctcactctgtatatatctcgggcatatttcccaatgggtgtttttgttgatgagcagaggttttggctatctaaactcagaagtcctgttgtgcag
|| ||||||||||| |||||||||||||||||||||||||| || || ||||| || |||||||||||| |||||||   |||||||||  ||| ||||| ||||   ||| ||  || ||||  |||      |  || | |  |     |||| |      ||  | |  | |  | |||  ||   |                                                                                
TATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttcttttcaaattatgttgctactgaattgtattactgaaattagcaactactt----atattatccagtcaaacatagatgcaga-tcttcatcagt--------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74235678|gb|DT643592.1|DT643592
EST:     AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: gi|78092883|gb|DV521257.1|DV521257
EST:     AGATACATGTTATATTGAGATTTTTCCTGTTGTTGAGAAATCCAGAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: gi|4804174|gb|AI666040.1|AI666040
EST:     AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: gi|32808275|gb|CD960509.1|CD960509
EST:     AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCGGAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: gi|76289426|gb|DV028994.1|DV028994
EST:     AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: gi|71427953|gb|DR809003.1|DR809003
EST:     AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: gi|113633600|gb|DW792172.1|DW792172
EST:     AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG                         TTATATGCTTGAGTTTTTGGGC
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGC
EST: gi|32793686|gb|CD945922.1|CD945922
EST:     AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: gi|86466720|gb|DY233090.1|DY233090
EST:     AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: gi|71427180|gb|DR808230.1|DR808230
EST:     AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: gi|50324081|gb|CO519207.1|CO519207
EST:     AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: gi|50331811|gb|CO526937.1|CO526937
EST:     AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: gi|78080763|gb|DV509175.1|DV509175
EST:     AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: gi|24462661|gb|BM660192.1|BM660192
EST:     CTGTTGTTGAGAAATCCAGAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
genomic: CTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
EST: gi|50327716|gb|CO522842.1|CO522842
EST:     AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG
genomic: AGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgttta ... tgttgtgcagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTG