1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTTGGAGATAGCTGACTTTATTAAAGGACTCGGATTAACCATCTTAAGGGGCGTCATGGAAGCACGCAAAAATAAAATCTGGGCACGGTTCACTGTTGAGgtaagcagttcaatgcattaagaaggttctctaggttggctgagaactcagaaggcttgaatagcttccccccagagcatgttattccatgactagatttcttttgcttcctccactgtctgctctatggaagttctcattttactttgtttattatgcag
species | Zea mays |
transcript | GRMZM2G031656_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCGTCATGGAAGCACGCAAAAATAAAATCTGGGCACGGTTCACTGTTGAG GCCAACAGGGATGTGACTAGAATGGAAATCTTCCTTTCCCTAATGCGCTTGEST: gi|76918687|gb|DV167416.1|DV167416
genomic: GCGTCATGGAAGCACGCAAAAATAAAATCTGGGCACGGTTCACTGTTGAGgtaagcagtt ... tattatgcagGCCAACAGGGATGTGACTAGAATGGAAATCTTCCTTTCCCTAATGCGCTTG
EST: GCGTCATGGAAGCACGCAAAAATAAAATCTGGGCACGGTTCACTGTTGAG GCCAACAGGGATGTGACTAGAATGGAAATCTTCCTTTCCCTAATGCGCTTGEST: gi|37385099|gb|CF629668.1|CF629668
genomic: GCGTCATGGAAGCACGCAAAAATAAAATCTGGGCACGGTTCACTGTTGAGgtaagcagtt ... tattatgcagGCCAACAGGGATGTGACTAGAATGGAAATCTTCCTTTCCCTAATGCGCTTG
EST: GCGTCATGGAAGCACGCAAAAATAAAATCTGGGCACGGTTCACTGTTGAG GCCAACAGGGATGTGACTAGAATGGAAATCTTCCTTTCCCTAATGCGCTTGEST: gi|40335493|gb|CK369563.1|CK369563
genomic: GCGTCATGGAAGCACGCAAAAATAAAATCTGGGCACGGTTCACTGTTGAGgtaagcagtt ... tattatgcagGCCAACAGGGATGTGACTAGAATGGAAATCTTCCTTTCCCTAATGCGCTTG
EST: GCGTCATGGAAGCACGCAAAAATAAAATCTGGGCACGGTTCACTGTTGAG GCCAACAGGGATGTGACTAGAATGGAAATCTTCCTTTCCCTAATGCGCTTGEST: gi|109637277|gb|EC590822.1|EC590822
genomic: GCGTCATGGAAGCACGCAAAAATAAAATCTGGGCACGGTTCACTGTTGAGgtaagcagtt ... tattatgcagGCCAACAGGGATGTGACTAGAATGGAAATCTTCCTTTCCCTAATGCGCTTG
EST: GCGTCATGGAAGCACGCAAAAATAAAATCTGGGCACGGTTCACTGTTGAG GCCAACAGGGATGTGACTAGAATGGAAATCTTCCTTTCCCTAATGCGCTTGEST: gi|60342621|gb|DN209594.1|DN209594
genomic: GCGTCATGGAAGCACGCAAAAATAAAATCTGGGCACGGTTCACTGTTGAGgtaagcagtt ... tattatgcagGCCAACAGGGATGTGACTAGAATGGAAATCTTCCTTTCCCTAATGCGCTTG
EST: TAAAATCTGGGCACGGTTCACTGTTGAG GCCAACAGGGATGTGACTAGAATGGAAATCTTCCTTTCCCTAATGCGCTTGEST: gi|50326100|gb|CO521226.1|CO521226
genomic: TAAAATCTGGGCACGGTTCACTGTTGAGgtaagcagtt ... tattatgcagGCCAACAGGGATGTGACTAGAATGGAAATCTTCCTTTCCCTAATGCGCTTG
EST: GCGTCATGGAAGCACGCAAAAATAAAATCTGGGCACGGTTCACTGTTGAG GCCAACAGGGATGTGACTAGAATGGAAATCTTCCTTTCCCTAATGCGCTTG
genomic: GCGTCATGGAAGCACGCAAAAATAAAATCTGGGCACGGTTCACTGTTGAGgtaagcagtt ... tattatgcagGCCAACAGGGATGTGACTAGAATGGAAATCTTCCTTTCCCTAATGCGCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGAGATAGCTGACTTTATTAAAGGACTCGGATTAACCATCTTAAGGGGCGTCATGGAAGCACGCAAAAATAAAATCTGGGCACGGTTCACTGTTGAGgtaagcagttcaatgcattaagaaggttctctaggttggctgagaactcagaaggcttgaatagcttccccccagagcatgttattccatgactagatttcttttgcttcctccactgtctgctctatggaagttctcattttactttgtttattatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG