1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAAACACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctggctttagttatgtagtcttatagataacaaagtttgatcattaaagtaagagagaaacttcaccttagtccgtagtactcatgttgttga...
species | Zea mays |
transcript | GRMZM2G003692_T07 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCTGCAGCTTTTTCATCGCAAACACATTCTGCTGAG CAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACCATTEST: gi|37376662|gb|CF624883.1|CF624883
genomic: GCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG CAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|14244326|gb|BG842296.2|BG842296
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG -A-AA-CGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|5343223|gb|AI795408.1|AI795408
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG -A-AA-CGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|14208321|gb|BG842006.1|BG842006
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG -A-AA-CGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|113703640|gb|EE681144.1|EE681144
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCT--G -AGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|32940746|gb|CF045565.1|CF045565
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG CAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|88757473|gb|DY541614.1|DY541614
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGTTGCAGCTTCTTCATCGCAAACACATTCTGCT--G -AGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|37397592|gb|CF636096.1|CF636096
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG CAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|32909212|gb|CF014024.1|CF014024
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCT--G -AGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|32856130|gb|CD995811.1|CD995811
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG -A-AA-CGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|88757474|gb|DY541615.1|DY541615
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCT--G -AGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|6101980|gb|AW126450.1|AW126450
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG CAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|88753506|gb|DY537647.1|DY537647
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG -A-AA-CGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|40337101|gb|CK371171.1|CK371171
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG CAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|37390564|gb|CF632514.1|CF632514
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG CAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|67023347|gb|CO452096.1|CO452096
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG -A-AA-CGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|31362808|gb|CD447165.1|CD447165
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG CAGAAACGTGAGAAGCGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|6022668|gb|AW067596.1|AW067596
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG CAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|32864069|gb|CF003751.1|CF003751
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG -A-AA-CGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|71759817|gb|DR957754.1|DR957754
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG CAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|211078663|gb|FL128724.1|FL128724
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCT--G -AGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|78021266|gb|DV489653.1|DV489653
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG CAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|211495955|gb|FL480154.1|FL480154
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATTGCAAACACATTTTGCT--G -AGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|6095476|gb|AW120143.1|AW120143
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG -A-AA-CGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|6194694|gb|AW146798.1|AW146798
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG -A-AA-CGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|5915523|gb|AW053164.1|AW053164
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG CAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|211078661|gb|FL128722.1|FL128722
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG CAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|93015973|gb|EB641493.1|EB641493
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACCCATTCTGCTGAG -A-AA-CGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|37387558|gb|CF630976.1|CF630976
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAG -A-AA-CGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATTEST: gi|60353742|gb|DN220715.1|DN220715
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
EST: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCT--G -AGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
genomic: CACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctg ... ttcctcacagCAGAAACGTGAGAAACGTGTTTCGGTGGAACGGTGTGTTGAACTGACAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAAACACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTGAGgttatccctggctttagttatgtagtcttatagataacaaagtttgatcattaaagtaagagagaaacttcaccttagtccgtagtactcatgttgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT