1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGATGTTTTTGGAAATTTATCTGCATTCAGTCACATTGTATTATTCGAGTCAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacatcattgtgccttagatataacttgttttcttttaatttttttcacttaagagttcaatagacacacattagctaccgctttctagcattctt...
species | Zea mays |
transcript | GRMZM2G000937_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAG ATGAGGAGGTTTTTCCACTCACATTTCAAGATTGACAGAGACCTTCAGTCGEST: gi|148929350|gb|EC875261.2|EC875261
genomic: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacatc ... tggttggcagATGAGGAGGTTTTTCCACTCACATTTCAAGATTGACAGAGACCTTCAGTCG
EST: CAGAAGAAAGACATGTTCTCCAGTTGCTTTTGCACAATTCCTTTCTTGAG ATGAGGAGGTTTTTCCACTCCCATTTCAAGATTGACAGAGACCTTCAGTCGEST: gi|6653847|gb|AW267252.1|AW267252
genomic: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacatc ... tggttggcagATGAGGAGGTTTTTCCACTCACATTTCAAGATTGACAGAGACCTTCAGTCG
EST: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCCCAATTCCTTTCTTGAG ATGGGGAGGTTTTTCCCCTCACATTTCAAGATTGACAGAGACCTTCAGTCGEST: gi|211018072|gb|FL437095.1|FL437095
genomic: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacatc ... tggttggcagATGAGGAGGTTTTTCCACTCACATTTCAAGATTGACAGAGACCTTCAGTCG
EST: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAG ATGGGGAGGTTTTTCCACTCACATTTCAAGATTGACAGAGACCTTCAGTCG
genomic: CAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacatc ... tggttggcagATGAGGAGGTTTTTCCACTCACATTTCAAGATTGACAGAGACCTTCAGTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATGTTTTTGGAAATTTATCTGCATTCAGTCACATTGTATTATTCGAGTCAGAAGAAAGACATGTTCTCCAGTTGCTTCTGCACAATTCCTTTCTTGAGgtaacacatcattgtgccttagatataacttgttttcttttaatttttttcacttaagagttcaatagacacacattagctaccgctttctagcattctt
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA