1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AGTCCTCAGGGAGAAAATAGAGAAGCTGGCAGCTTCCCTCAAATTTCCTTTGAAAAAACTTTTCGTGGTAGATGGGTCTACCAGATCAAGCCACAGTAATgtatgttaattacttatattctgagccattaataatttagtgctgctatttgaaccattgattctctttcag
species | Zea mays |
transcript | GRMZM2G702159_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGAAAAAACTTTTCGTGGTAGATGGGTCTACCAGATCAAGCCACAGTAAT GCTTACATGTATGGATTTTTTAAGAATAAACGCATAGTACTCTATGACACAEST: gi|33285753|gb|CF075548.1|CF075548
genomic: TGAAAAAACTTTTCGTGGTAGATGGGTCTACCAGATCAAGCCACAGTAATgtatgttaat ... tctctttcagGCTTACATGTATGGATTTTTTAAGAATAAACGCATAGTACTCTATGACACA
EST: TGAAAAAACTTTTCGTGGTAGATGGGTCTGCCAGATCAAGCCACAGTAAT GCTTACATGTATGGATTTTTTAAGAATAAACGCATAGTACTCTATGACACAEST: gi|28188199|gb|CB179809.1|CB179809
genomic: TGAAAAAACTTTTCGTGGTAGATGGGTCTACCAGATCAAGCCACAGTAATgtatgttaat ... tctctttcagGCTTACATGTATGGATTTTTTAAGAATAAACGCATAGTACTCTATGACACA
EST: TGAAAAAACTTTTCGTGGTAGATGGGTCTACCAGATCAAGCCACAGCAAT GCTTACATGTATGGATTTTTTAAGAATAAACGCATAGTACTCTATGACACAEST: gi|33770597|gb|CF272891.1|CF272891
genomic: TGAAAAAACTTTTCGTGGTAGATGGGTCTACCAGATCAAGCCACAGTAATgtatgttaat ... tctctttcagGCTTACATGTATGGATTTTTTAAGAATAAACGCATAGTACTCTATGACACA
EST: TGAAAAAACTTTTCGTGGTAGATGGGTCTACCAGATCAAGCCACAGTAAT GCTTACATGTATGGATTTTTTAAGAATAAACGCATAGTACTCTATGACACA
genomic: TGAAAAAACTTTTCGTGGTAGATGGGTCTACCAGATCAAGCCACAGTAATgtatgttaat ... tctctttcagGCTTACATGTATGGATTTTTTAAGAATAAACGCATAGTACTCTATGACACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCCTCAGGGAGAAAATAGAGAAGCTGGCAGCTTCCCTCAAATTTCCTTTGAAAAAACTTTTCGTGGTAGATGGGTCTACCAGATCAAGCCACAGTAATgtatgttaattacttatattctgagccattaataatttagtgctgctatttgaaccattgattctctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA