1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGAATGGCGAGCCCTTCTTGATGAGATGGCAGTTGTGGCAACTGAGGAATATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTTgtaagtccttgatcccatcgattgccatactacagtaacataaaaagatgggggtagaccagtactggaggctccacctgagtggtgtctagagatacta...
species | Zea mays |
transcript | GRMZM2G473001_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTT GCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCCEST: gi|211386539|gb|FL356617.1|FL356617
genomic: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTTgtaagtcctt ... gtgttgacagGCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCC
EST: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTT GCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCCEST: gi|211378594|gb|FL355187.1|FL355187
genomic: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTTgtaagtcctt ... gtgttgacagGCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCC
EST: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTT GCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCCEST: gi|211356395|gb|FL313778.1|FL313778
genomic: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTTgtaagtcctt ... gtgttgacagGCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCC
EST: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTT GCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCCEST: gi|211208426|gb|FL344245.1|FL344245
genomic: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTTgtaagtcctt ... gtgttgacagGCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCC
EST: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTT GCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCCEST: gi|211528158|gb|FL316545.1|FL316545
genomic: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTTgtaagtcctt ... gtgttgacagGCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCC
EST: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTT GCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCCEST: gi|13125979|gb|BG316654.1|BG316654
genomic: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTTgtaagtcctt ... gtgttgacagGCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCC
EST: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTT GCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCCEST: gi|13125970|gb|BG316645.1|BG316645
genomic: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTTgtaagtcctt ... gtgttgacagGCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCC
EST: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTT GCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCCEST: gi|50332032|gb|CO527158.1|CO527158
genomic: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTTgtaagtcctt ... gtgttgacagGCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCC
EST: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTT GCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCCEST: gi|33466459|gb|CF243508.1|CF243508
genomic: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTTgtaagtcctt ... gtgttgacagGCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCC
EST: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTT GCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCC
genomic: ATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTTgtaagtcctt ... gtgttgacagGCAACCCCTGAAACAGAGTATGGTAGGATGAACATAGGAAGCAGGCCATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATGGCGAGCCCTTCTTGATGAGATGGCAGTTGTGGCAACTGAGGAATATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTTgtaagtccttgatcccatcgattgccatactacagtaacataaaaagatgggggtagaccagtactggaggctccacctgagtggtgtctagagatacta
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