1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGGCTGTCTGAATTCCTGGATCCTGAGATCAAGAGATGGTCAAATGGAAAGGAAGGAAATCTGAGGGCCCTGCTATCCACATTGCAATATgtaagcagctaaatttcatgcatccttaaacccgtaacatagaacatggaaaaggttatcacgtgtcgctctgtttcccctggcag
species | Zea mays |
transcript | GRMZM2G438895_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAAATGGAAAGGAAGGAAATCTGAGGGCCCTGCTATCCACATTGCAATAT ATTCTTGGTGCCGATAGTGGCTGGCAACCGGTGCCACTAACAGATCTCATTEST: gi|60339512|gb|DN206485.1|DN206485
genomic: CAAATGGAAAGGAAGGAAATCTGAGGGCCCTGCTATCCACATTGCAATATgtaagcagct ... cccctggcagATTCTTGGTGCCGATAGTGGCTGGCAACCGGTGCCACTAACAGATCTCATT
EST: CAAATGGAAAGGAAGGAAATCTGAGGGCCCTGCTATCCACATTGCAATAT ATTCTTGGTGCCGATAGTGGCTGGCAACCGGTGCCACTAACAGATCTCATTEST: gi|60346103|gb|DN213076.1|DN213076
genomic: CAAATGGAAAGGAAGGAAATCTGAGGGCCCTGCTATCCACATTGCAATATgtaagcagct ... cccctggcagATTCTTGGTGCCGATAGTGGCTGGCAACCGGTGCCACTAACAGATCTCATT
EST: CAAATGGAAAGGAAGGAAATCTGAGGGCCCTGCTATCCACATTGCAATAT ATTCTTGGTGCCGATAGTGGCTGGCAACCGGTGCCACTAACAGATCTCATTEST: gi|33942293|gb|CF348893.1|CF348893
genomic: CAAATGGAAAGGAAGGAAATCTGAGGGCCCTGCTATCCACATTGCAATATgtaagcagct ... cccctggcagATTCTTGGTGCCGATAGTGGCTGGCAACCGGTGCCACTAACAGATCTCATT
EST: GAAGGAAATCTGAGGGCCCTGCTATCCACATTGCAATAT ATTCTTGGTGCCGATAGTGGCTGGCAACCGGTGCCACTAACAGATCTCATTEST: gi|67012495|gb|CO441244.1|CO441244
genomic: GAAGGAAATCTGAGGGCCCTGCTATCCACATTGCAATATgtaagcagct ... cccctggcagATTCTTGGTGCCGATAGTGGCTGGCAACCGGTGCCACTAACAGATCTCATT
EST: CAAATGGAAAGGAAGGAAATCTGAGGGCCCTGCTATCCACATTGCAATAT ATTCTTGGTGCTGATAGTGGCTGGCAACCGGTGCCACTAACAGATCTCATTEST: gi|4646794|gb|AI621869.1|AI621869
genomic: CAAATGGAAAGGAAGGAAATCTGAGGGCCCTGCTATCCACATTGCAATATgtaagcagct ... cccctggcagATTCTTGGTGCCGATAGTGGCTGGCAACCGGTGCCACTAACAGATCTCATT
EST: CAAATGGAAAGGAAGGAAATCTGAGGGCCCTGCTATCCACATTGCAATAT ATTCTTGGTGCCGATAGTGGCTGGCAACCGGTGCCACTAACAGATCTCATT
genomic: CAAATGGAAAGGAAGGAAATCTGAGGGCCCTGCTATCCACATTGCAATATgtaagcagct ... cccctggcagATTCTTGGTGCCGATAGTGGCTGGCAACCGGTGCCACTAACAGATCTCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGCTGTCTGAATTCCTGGATCCTGAGATCAAGAGATGGTCAAATGGAAAGGAAGGAAATCTGAGGGCCCTGCTATCCACATTGCAATATgtaagcagctaaatttcatgcatccttaaacccgtaacatagaacatggaaaaggttatcacgtgtcgctctgtttcccctggcag
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA