1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATTTCAACCTCGTAAGGGAAAGTATCTAGCAGCGGCCTCAGATAAAGCTATCTACATACTTGATGGGGAGACACAACATGCTTGTAGAAGTCCCTTGCAGgttgggttaccaaggatcactacttaagtctgccaaggatctatttgcaagttactatagttacatgcaatttatgacgtgcataattagcttctttcgt...
species | Zea mays |
transcript | GRMZM2G425377_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCTACATACTTGATGGGGAGACACAACATGCTTGTAGAAGTCCCTTGCAG GGGCACAATAAGAATATTCAATCGCTTTGTTGGGATTCTGCTGGCGAATATEST: gi|78115254|gb|DV533642.1|DV533642
genomic: TCTACATACTTGATGGGGAGACACAACATGCTTGTAGAAGTCCCTTGCAGgttgggttac ... aaatgtgtagGGGCACAATAAGAATATTCAATCGCTTTGTTGGGATTCTGCTGGCGAATAT
EST: TCTACATACTTGATGGGGAGACACAACATGCTTGTAGAAGTCCCTTGCAG GGGCACAATAAGAATATTCAATCGCTTTGTTGGGATTCTGCTGGCGAATATEST: gi|95107721|gb|EB739950.1|EB739950
genomic: TCTACATACTTGATGGGGAGACACAACATGCTTGTAGAAGTCCCTTGCAGgttgggttac ... aaatgtgtagGGGCACAATAAGAATATTCAATCGCTTTGTTGGGATTCTGCTGGCGAATAT
EST: TCTACATACTTGATGGGGAGACACAACATGCTTGTAGAAGTCCCTTGCAG GGGCACAATAAGAATATTCAATCGCTTTGTTGGGATTCTGCTGGCGAATATEST: gi|37392475|gb|CF633489.1|CF633489
genomic: TCTACATACTTGATGGGGAGACACAACATGCTTGTAGAAGTCCCTTGCAGgttgggttac ... aaatgtgtagGGGCACAATAAGAATATTCAATCGCTTTGTTGGGATTCTGCTGGCGAATAT
EST: GCTTGTAGAAGTCCC-TGTCAG GGGCACAATAAGAATATTCAATCGCTTTGTTGGGATTCTGCTGGCGAATAEST: gi|5860417|gb|AW011639.1|AW011639
genomic: GCTTGTAGAAGTCCCTTG-CAGgttgggttac ... aaatgtgtagGGGCACAATAAGAATATTCAATCGCTTTGTTGGGATTCTGCTGGCGAATA
EST: TCTACATACTTGATGGGGAGACACAACATGCTTGTAGAAGTCCCTTGCAG GGGCACAATAAGAATATTCAATCGCTTTGTTGGGATTCTGCTGGCGAATATEST: gi|78115253|gb|DV533641.1|DV533641
genomic: TCTACATACTTGATGGGGAGACACAACATGCTTGTAGAAGTCCCTTGCAGgttgggttac ... aaatgtgtagGGGCACAATAAGAATATTCAATCGCTTTGTTGGGATTCTGCTGGCGAATAT
EST: TCTACATACTTGATGGGGAGACACAACATGCTTGTAGAAGTCCCTTGCAG GGGCACAATAAGAATATTCAATCGCTTTGTTGGGATTCTGCTGGCGAATATEST: gi|60400574|gb|DN233381.1|DN233381
genomic: TCTACATACTTGATGGGGAGACACAACATGCTTGTAGAAGTCCCTTGCAGgttgggttac ... aaatgtgtagGGGCACAATAAGAATATTCAATCGCTTTGTTGGGATTCTGCTGGCGAATAT
EST: TCTACATACTTGATGGGGAGACACAACATGCTTGTAGAAGTCCCTTGCAG GGGCACAATAAGAATATTCAATCGCTTTGTTGGGATTCTGCTGGCGAATATEST: gi|60344594|gb|DN211567.1|DN211567
genomic: TCTACATACTTGATGGGGAGACACAACATGCTTGTAGAAGTCCCTTGCAGgttgggttac ... aaatgtgtagGGGCACAATAAGAATATTCAATCGCTTTGTTGGGATTCTGCTGGCGAATAT
EST: TCTACATACTTGATGGGGAGACACAACATGCTTGTAGAAGTCCCTTGCAG GGGCACAATAAGAATATTCAATCGCTTTGTTGGGATTCTGCTGGCGAATATEST: gi|37393934|gb|CF634234.1|CF634234
genomic: TCTACATACTTGATGGGGAGACACAACATGCTTGTAGAAGTCCCTTGCAGgttgggttac ... aaatgtgtagGGGCACAATAAGAATATTCAATCGCTTTGTTGGGATTCTGCTGGCGAATAT
EST: TCTACATACTTGATGGGGAGACACAACATGCTTGTAGAAGTCCCTTGCAG GGGCACAATAAGAATATTCAATCGCTTTGTTGGGATTCTGCTGGCGAATAT
genomic: TCTACATACTTGATGGGGAGACACAACATGCTTGTAGAAGTCCCTTGCAGgttgggttac ... aaatgtgtagGGGCACAATAAGAATATTCAATCGCTTTGTTGGGATTCTGCTGGCGAATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTCAACCTCGTAAGGGAAAGTATCTAGCAGCGGCCTCAGATAAAGCTATCTACATACTTGATGGGGAGACACAACATGCTTGTAGAAGTCCCTTGCAGgttgggttaccaaggatcactacttaagtctgccaaggatctatttgcaagttactatagttacatgcaatttatgacgtgcataattagcttctttcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT