Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAGgtaaatataaatcacttattgaaatactcttctggtcccttttagaaggcttaccgacaattttgtcaagtccattatagaaggcactccttaggcctgg...

Basic information

species Zea mays
transcript GRMZM2G381933_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G381933_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g15490.3 (Oryza sativa), 5'ss of exon 8
GTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAGgtaaatataaatcactt--attgaaatact-------cttctggtcccttttagaaggcttaccgacaattttg---tcaagtccattatagaaggcactccttaggcctgg---------------------------------------------
||| || |||  |||||||||  |||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||| ||||  |||| | |  |  || |||||| |       | | | | | |  |  |   |||| | | | | ||     |   ||  | |||  ||   |||    |    ||                                              
GTTCGGCACAGTTGAGGATAAGCTAGGTGCAGGCTTGTGCAAGAAGCTTCATGCAATTGGCTGGCGAGTTTCTCATGTAGCAGTTGTTTCCAATGAAgtaag-ataagttaaatgaatcgaaatagttgtatgtcctataggctccatgtgggagcttgcagcctacttgcaactgctgtgaactatgcaatctacttgccaactttgccagttttctggcacataatatctaacagaaattattgttatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33285805|gb|CF075600.1|CF075600
EST:     TTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAG                         ATTGATTCTGTTGCTGAAGAAGTTGAACGTTGTAAATCTACTGATGACATG
genomic: TTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAGgtaaatataa ... ggccttgcagATTGATTCTGTTGCTGAAGAAGTTGAACGTTGTAAATCTACTGATGACATG
EST: gi|33097429|gb|CF057389.1|CF057389
EST:     TTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAG                         ATTGATTCTGTTGTTGAAGAAGTTGAACGTTGTAAATCTACTGATGACATG
genomic: TTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAGgtaaatataa ... ggccttgcagATTGATTCTGTTGCTGAAGAAGTTGAACGTTGTAAATCTACTGATGACATG
EST: gi|33285569|gb|CF075364.1|CF075364
EST:     TTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAG                         ATTGATTCTGTTGCTGAAGAAGTTGAACGTTGTAAATCTACTGATGACATG
genomic: TTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAGgtaaatataa ... ggccttgcagATTGATTCTGTTGCTGAAGAAGTTGAACGTTGTAAATCTACTGATGACATG
EST: gi|71767360|gb|DR965297.1|DR965297
EST:     GCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAG                         ATTGATTCTGTTGCTGAAGAAGTTGAACGTTGTAAATCTACTGATGACATG
genomic: GCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAGgtaaatataa ... ggccttgcagATTGATTCTGTTGCTGAAGAAGTTGAACGTTGTAAATCTACTGATGACATG
EST: gi|33770862|gb|CF273156.1|CF273156
EST:     TTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAG                         ATTGATTCTGTTGCTGAAGAAGTTGAACGTTGTAAATCTACTGATGACATG
genomic: TTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAGgtaaatataa ... ggccttgcagATTGATTCTGTTGCTGAAGAAGTTGAACGTTGTAAATCTACTGATGACATG
EST: gi|78087486|gb|DV515879.1|DV515879
EST:     TTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAG                         ATTGATTCTGTTGCTGAAGAAGTTGAACGTTGTAAATCTACTGATGACATG
genomic: TTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAGgtaaatataa ... ggccttgcagATTGATTCTGTTGCTGAAGAAGTTGAACGTTGTAAATCTACTGATGACATG
EST: gi|67023704|gb|CO452453.1|CO452453
EST:     TTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAG                         ATTGATTCTGTCGCTGAAGAAGTTGAACGTTGTAAATCTACTGATGACATG
genomic: TTCATGCAATTGGCTGGCGGGTTTCTCATGTAGCAGTTGTTCGCAATGAGgtaaatataa ... ggccttgcagATTGATTCTGTTGCTGAAGAAGTTGAACGTTGTAAATCTACTGATGACATG