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ATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGGgtatgtacaaacatttttttccttgcaaaagtagaagcactactgtaccgtattttagtaacatttttatgatttctttagtattaaatggtacccttac...
species | Zea mays |
transcript | GRMZM2G130230_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGGGAAGACTTTGGTACTGAAGGGCGTGGASGATATTTTGACCAATATGG AATCATTCGTGATATCATTCAGAATCATTTACTGCAGEST: gi|67037531|gb|CO464345.1|CO464345
genomic: AGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGGgtatgtacaa ... gctgttgcagAATCATTCGTGATATCATTCAGAATCATTTACTGCAG
EST: AGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGG AATCATTCGAGATATCATTCAGAATCATTTACTGCAGEST: gi|71447340|gb|DR828390.1|DR828390
genomic: AGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGGgtatgtacaa ... gctgttgcagAATCATTCGTGATATCATTCAGAATCATTTACTGCAG
EST: AGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACAAATATGG AATCATTCGTGATATCATTCAGAATCATTTACTGCAGEST: gi|6194863|gb|AW146967.1|AW146967
genomic: AGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGGgtatgtacaa ... gctgttgcagAATCATTCGTGATATCATTCAGAATCATTTACTGCAG
EST: AGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGG AATCATTCGAGATATCATTCAGAATCATTTACTGCAGEST: gi|211483712|gb|FL115157.1|FL115157
genomic: AGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGGgtatgtacaa ... gctgttgcagAATCATTCGTGATATCATTCAGAATCATTTACTGCAG
EST: AGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGG AATCATTCGTGATATCATTCAGAATCATTTACTGCAGEST: gi|211483710|gb|FL115155.1|FL115155
genomic: AGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGGgtatgtacaa ... gctgttgcagAATCATTCGTGATATCATTCAGAATCATTTACTGCAG
EST: AGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGG AATCATTCGTGATATCATTCAGAATCATTTACTGCAGEST: gi|605736|gb|T27548.1|T27548
genomic: AGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGGgtatgtacaa ... gctgttgcagAATCATTCGTGATATCATTCAGAATCATTTACTGCAG
EST: CGTGGAGGATATTTTGACCAATATGG AATCATTCGTGATATCATTCAGAATCATTTACTGCAGEST: gi|211483711|gb|FL115156.1|FL115156
genomic: CGTGGAGGATATTTTGACCAATATGGgtatgtacaa ... gctgttgcagAATCATTCGTGATATCATTCAGAATCATTTACTGCAG
EST: AGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGG AATCATTCGTGATATCATTCAGAATCATTTACTGCAGEST: gi|211483713|gb|FL115158.1|FL115158
genomic: AGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGGgtatgtacaa ... gctgttgcagAATCATTCGTGATATCATTCAGAATCATTTACTGCAG
EST: AGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGG AATCATTCGTGATATCATTCAGAATCATTTACTGCAGEST: gi|211483714|gb|FL115159.1|FL115159
genomic: AGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGGgtatgtacaa ... gctgttgcagAATCATTCGTGATATCATTCAGAATCATTTACTGCAG
EST: AGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGG AATCATTCGTGATATCATTCAGAATCATTTACTGCAGEST: gi|78109778|gb|DV528194.1|DV528194
genomic: AGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGGgtatgtacaa ... gctgttgcagAATCATTCGTGATATCATTCAGAATCATTTACTGCAG
EST: AGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGG AATCATTCGTGATATCATTCAGAATCATTTACTEST: gi|33103286|gb|CF063246.1|CF063246
genomic: AGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGGgtatgtacaa ... gctgttgcagAATCATTCGTGATATCATTCAGAATCATTTACT
EST: ACTGAAGGGCGTGGAGGATATTTTGACCAATATGG AATCATTCGAGATATCATTCAGAATCATTTACTGCAG
genomic: ACTGAAGGGCGTGGAGGATATTTTGACCAATATGGgtatgtacaa ... gctgttgcagAATCATTCGTGATATCATTCAGAATCATTTACTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGGgtatgtacaaacatttttttccttgcaaaagtagaagcactactgtaccgtattttagtaacatttttatgatttctttagtattaaatggtacccttac
- - - - - GGAAGA
- - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagtag