1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTACTTGACAATCTACCACATGACCTTGTCTATTCACCAGATCAGGTCTCTCCATGGATGGAAGTGTGGATTGAAAAAGTAAAAGGCAGgtttgtgacttttgtgttttcagaacctttgctgtgcactaccacagttgaagatcatctatgtttgctctcgtgttctttgttcatgtgggggtttcag...
species | Zea mays |
transcript | GRMZM2G101217_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATTGAAAAAAGTAAAAGGCAG TTCACAAGCTTCCGAAGTCTATAAGCCATTACAAGACCCATTGATTTCTCGEST: gi|76924073|gb|DV169790.1|DV169790
genomic: ATTG-AAAAAGTAAAAGGCAGgtttgtgact ... ctgaagaaagTTCACAAGCTTCCGAAGTCTATAAGCCATTACAAGACCCATTGATTTCTCG
EST: ATCAGGTCTCTCCATGGATGGAAGTGTGGATTGAAAAAAGTAAA-GGCAG TTCACAAGCTTCCGAAGTCTATAAGCCATTACAAGACCCATTGAEST: gi|71418854|gb|DR804568.1|DR804568
genomic: ATCAGGTCTCTCCATGGATGGAAGTGTGGATTGAAAAA-GTAAAAGGCAGgtttgtgact ... ctgaagaaagTTCACAAGCTTCCGAAGTCTATAAGCCATTACAAGACCCATTGA
EST: GATCAGGTCTCTCCATGGATGGAAGTGTGGATTGAAAAAGTAAAAGGCAG TTCACAAGCTTCCGAAGTCTATAAGCCATTACAAGACCCATTGATTTCTCGEST: gi|71327533|gb|DR800378.1|DR800378
genomic: GATCAGGTCTCTCCATGGATGGAAGTGTGGATTGAAAAAGTAAAAGGCAGgtttgtgact ... ctgaagaaagTTCACAAGCTTCCGAAGTCTATAAGCCATTACAAGACCCATTGATTTCTCG
EST: GATCAGGTCTCTCCATGGATGGAAGTGTGGATTGAAAAAGTAAAAGGCAG TTCACAAGCTTCCGAAGTCTATAAGCCATTACAAGACCCATTGATTTCTCG
genomic: GATCAGGTCTCTCCATGGATGGAAGTGTGGATTGAAAAAGTAAAAGGCAGgtttgtgact ... ctgaagaaagTTCACAAGCTTCCGAAGTCTATAAGCCATTACAAGACCCATTGATTTCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTTGACAATCTACCACATGACCTTGTCTATTCACCAGATCAGGTCTCTCCATGGATGGAAGTGTGGATTGAAAAAGTAAAAGGCAGgtttgtgacttttgtgttttcagaacctttgctgtgcactaccacagttgaagatcatctatgtttgctctcgtgttctttgttcatgtgggggtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG