Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagccacctgataccctttatgaaactttagtatttctcaacaaatattaagatattctctttataagttaaaaaaagttagaaatcctgcaagcttaacatatgcgcttccgtcatttttccccttttggcttcatatttcaattgtgacctgaaaattctccgtgcttctacaatttctctag

Basic information

species Zea mays
transcript GRMZM2G093359_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093359_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g10310.3 (Oryza sativa), 5'ss of exon 7
CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagccacctgataccctttatgaaactttagtatttctcaacaaatattaagatattctctttataagttaaaaaaagttagaaatcctgcaagcttaacatatgcgcttccgtcatttttccccttttggcttcatatttcaattgtgacctgaaaattctccgtgcttctacaatttctctag
|||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||| || |||  |  |   |  |||  |      | || ||    | |||||      ||| ||||   |     |   |    |||||   | | |                                                                               
CCAGAGATATCCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCAgtaagacacctgatgccttttcagttatact--tatgccatgttcactaatacaccactctct------gttgaaaagtttcctgcacatttattgcttagtttttac-------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12046552|gb|BF728691.1|BF728691
EST:     TCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA                         GTACCACCATATCACCATGGATTGGTACTCTTGATGCTTTGAAGCCTTTCA
genomic: TCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagccacc ... atttctctagGTACCACCATATCACCATGGATTGTTACTCTTGATGCTTTGAAGCCTTTCA
EST: gi|78180016|gb|DV550389.1|DV550389
EST:     TCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA                         GTACCACCATATCACCATGGATTGTTACTCTTGATGCTTTGAAGCCTTTCA
genomic: TCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagccacc ... atttctctagGTACCACCATATCACCATGGATTGTTACTCTTGATGCTTTGAAGCCTTTCA
EST: gi|6973663|gb|AW438237.1|AW438237
EST:     TCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA                         GTACCACCATATCACCATGGATTGTTACTCTTGATGCTTTGAAGCCTTTCA
genomic: TCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagccacc ... atttctctagGTACCACCATATCACCATGGATTGTTACTCTTGATGCTTTGAAGCCTTTCA
EST: gi|149106513|gb|EE188405.2|EE188405
EST:     CAGGCTTGGGAGACTATACCTCTTGGACCTTTCCCTTGG-AAAAGCTTCA                         GTACCACCATATCACCCATGGATTGTTTACTCTTGATGCTT
genomic: CAGGCTTGGGAGACTATACCTCTTGGACCTTTCC-TTGGGAAAAGCTTCAgtaagccacc ... atttctctagGTACCACCATATCACC-ATGGATTGTT-ACTCTTGATGCTT