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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTTCCAAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAGgtactcttaggttaatcatattataattatgatatatgactattacctttttctgaaaacttctttagctggttgaaatgtag

Basic information

species Zea mays
transcript GRMZM2G044819_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044819_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g14810.1 (Oryza sativa), 5'ss of exon 8
GCTGTTTCCAAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAGgtactcttaggtta--atcatattataattatga--------tatatgactattacctttttctgaaaacttctttagctggttgaaatgtag
||||||||||  |||||||||||||| ||||||||||| ||||| |||||| | |  ||||   || |     ||  |||||        |||||||  | ||  ||  ||| |||| |||||||||||||||||||||||
GCTGTTTCCAGGGCACTTTTTCGAGCGCATGTAGAAGGTCAACTCAAGgtaatgtctggttgtcattactcattagatatgacaatactctatatgatcaata--ttggtctaaaaaattctttagctggttgaaatgtag

upper sequence: GRMZM2G044819_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv05s0020g00880.t01 (Vitis vinifera), 5'ss of exon 8
GCTGTTTCCAAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAGgtactcttag--gttaatcatattataattatgatatatgactattacctttttctgaaaacttctt-tagctggttgaaatgtag
||||||   || || || ||    |||||||||||||||||||||||||||    | |   || |  |  ||    || | || | | | | ||    ||  |   || |  ||  | | |||     ||  ||
GCTGTTGGAAAGGCCCTCTTCAAGGCACATGTAGAAGGCCAACTTAAGgtaaatattgccattgagtaattttcttttctaatgt-taaatgttgtggttcacaagaatcaactgattgatggcatccatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17970200|gb|BM276964.1|BM276964
EST:     GCTGTTTCCAAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAG                         AGAGAAATAATGGCTGAGCCTGATCCGGTT-GTAGAGCCTGATCCAGAACT
genomic: GCTGTTTCCAAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAGgtactcttag ... tgaaatgtagAGAGAAATAATGGCTGAGCCTGATC-GGTTTGTAGAGCCTGATCCAGAACT
EST: gi|32937883|gb|CF042702.1|CF042702
EST:     GCTGTTTCCGAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAG                         AGAGAAATAATGGCTGAGCCTGATCGGTTTGTAGAGCCTGATCCAGAACTT
genomic: GCTGTTTCCAAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAGgtactcttag ... tgaaatgtagAGAGAAATAATGGCTGAGCCTGATCGGTTTGTAGAGCCTGATCCAGAACTT
EST: gi|87156662|gb|DY401451.1|DY401451
EST:     GCTGTTTCCAAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAG                         AGAGAAATAATGGCTGAGCCTGATCGGTTTGTAGAGCCTGATCCAGAACTT
genomic: GCTGTTTCCAAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAGgtactcttag ... tgaaatgtagAGAGAAATAATGGCTGAGCCTGATCGGTTTGTAGAGCCTGATCCAGAACTT
EST: gi|32833943|gb|CD973621.1|CD973621
EST:     ATGCTGTTTCCAAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAG                         AGAGAAATAATGGCTGAGCCTGATCGGTTTGTAGAGCCTGATCCAGAACTT
genomic: ATGCTGTTTCCAAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAGgtactcttag ... tgaaatgtagAGAGAAATAATGGCTGAGCCTGATCGGTTTGTAGAGCCTGATCCAGAACTT