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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAACAGCAACCCGGGCACGTATTGAAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACGgtattatcactggttctgttaattaactacatgacaaaattgttgtgtttacttcctactgatttgcactttttgttgttctgtag

Basic information

species Zea mays
transcript GRMZM2G044011_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044011_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os04g56480.1 (Oryza sativa), 5'ss of exon 7
CATAACAGCAACCCGGGCACGTATTGAAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACGgtattatcactggttctgttaattaactacatgacaaaattgttgtgtttacttcctactgatttgcactttttgttgttctgtag
|||||||| |||| | ||||||||||||||||| |||||| |||||||||||||||| |||||||| || ||| ||||||    |||||||||| ||      |   | |   ||||||| | | || | || ||||| ||     ||||| | || |||||
CATAACAGTAACCAGAGCACGTATTGAAACATCTATTCCTCGGAAGCATGGCCCTGCGATTGCTGGTTATGAGTCGgtatggaaactggttctgata-----ttgtgtaatctaattgttctatctattcccaactgactt---tgttttgctcttttgtag

upper sequence: GRMZM2G044011_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA10G31310.1 (Glycine max), 5'ss of exon 8
CATAACAGCAACCCGGGCACGTATTGAAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACGgtattatcactggttctgttaattaactacatgacaaaattgttgtgtttacttcctactgattt---gcactttttgttgttctgtag
 || || |  || ||  | || || ||||||||||||||| | || ||||| |||||||||||||| || ||||  |||| ||| ||   | |  |||   |       |  || |   |   |||   |   ||  || |   |||   |      || |||||
TATGACTGTTACTCGTTCGCGGATAGAAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctctctctattgtaagatatcggtgaatgaattcaata-atttgagtgacacaaatctaaagcatcctcctcctttttgtag

upper sequence: GRMZM2G044011_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA20G36200.1 (Glycine max), 5'ss of exon 8
CATAACAGCAACCCGGGCACGTATTGAAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACGgtattatcactggttctgttaattaactaca-tgacaaaattgttgtgtttacttcctactgattt---gcactttttgttgttctgtag
 || || |  || ||  | || || ||||||||||||||| | || ||||| |||||||||||||| || ||||  |||| ||| ||   ||| ||     |   || |||   ||||      |||   |  |||  || |   |||   |      || |||||
TATGACTGTTACTCGTTCGCGGATAGAAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctctctctctattgtaagatatcagtgaatgaattcaataatttgaatgatacgaatctaaggcatcctcctcccttttgtag

upper sequence: GRMZM2G044011_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT4G27650.1 (Arabidopsis thaliana), 5'ss of exon 9
CATAACAGCAACCCGGGCACGTATTGAAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACGgtattatcactggttctgttaattaactacatgac-aaaattgttgtgtttactt--cctactgatttg---cactttttgttgttctgtag
  | |||   | ||| ||||| || |||||||| ||||||||||||||||| |||||||||||||| |||||| | ||||  ||  |   | | ||  | |  ||  || | ||||||  | |   || ||  |||    ||||    || |||||| |  |||||||
TGTGACAAGTAGCCGTGCACGAATAGAAACATCCATTCCTAGGAAGCATGGACCTGCAATTGCTGGTTACGAGTCTgtatgttccttcactgt-ttcgtcatatatgtgcccaaaattcgtttacatatttatcctttcaatttatgtcattttttgcttctctgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67018605|gb|CO447354.1|CO447354
EST:     GCCCTGCAATTGCTGGCTACGAGACG                         GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
genomic: GCCCTGCAATTGCTGGCTACGAGACGgtattatcac ... tgttctgtagGCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
EST: gi|67024357|gb|CO453106.1|CO453106
EST:     AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACG                         GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
genomic: AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACGgtattatcac ... tgttctgtagGCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
EST: gi|71763506|gb|DR961443.1|DR961443
EST:     AAACATCAATCCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACG                         GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
genomic: AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACGgtattatcac ... tgttctgtagGCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
EST: gi|71442136|gb|DR823186.1|DR823186
EST:     AAACATCAATTCCTAGAAAGCATGGCCCTGCAATTGCTGACTACGAGACG                         GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
genomic: AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACGgtattatcac ... tgttctgtagGCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
EST: gi|32825337|gb|CD965059.1|CD965059
EST:     AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACG                         GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
genomic: AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACGgtattatcac ... tgttctgtagGCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
EST: gi|76016282|gb|DT943452.1|DT943452
EST:     AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACG                         GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
genomic: AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACGgtattatcac ... tgttctgtagGCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
EST: gi|89251335|gb|DY623121.1|DY623121
EST:     AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACG                         GCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA
genomic: AAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACGgtattatcac ... tgttctgtagGCCCTCAAGAAGTTCTTTGAGTATGTTTTGCAA