1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGGTGTACAGCCTTCAACAGCCACCACATCACAGGGCAGTTCATCGCGTAAGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttttacaatattttgagctcgttgagtccatctacacatgatatggaagtgattaccttatggaactacgccttgatgttccattttgcattaaatgtgtag
species | Zea mays |
transcript | GRMZM2G037185_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|29543953|gb|CB604333.1|CB604333
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|211433047|gb|FL005816.1|FL005816
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAG GCACCTGANAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|13515727|gb|BG518003.1|BG518003
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|16925940|gb|BM079008.1|BM079008
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|23357513|gb|BU645162.1|BU645162
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAGCCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|148985612|gb|EE029713.2|EE029713
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|93281778|gb|EB674042.1|EB674042
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|40334979|gb|CK369049.1|CK369049
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|50332346|gb|CO527472.1|CO527472
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|149106744|gb|EE188640.2|EE188640
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|71766015|gb|DR963952.1|DR963952
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGTTCTGGTGGTAACCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|37382129|gb|CF627990.1|CF627990
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|116817619|gb|EC860494.1|EC860494
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|7227799|gb|AW566440.1|AW566440
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAGCCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|4775894|gb|AI664897.1|AI664897
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAGCCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|13515728|gb|BG518004.1|BG518004
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|16379636|gb|BI993068.1|BI993068
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|33467511|gb|CF244560.1|CF244560
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAG GCCCCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|60355659|gb|DN222632.1|DN222632
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|37401441|gb|CF638084.1|CF638084
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACACGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|30306883|gb|CD001556.1|CD001556
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCAEST: gi|31361823|gb|CD446180.1|CD446180
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
EST: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAGCCGAGCCGAAAAG GCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
genomic: AGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttt ... aaatgtgtagGCACCTGAAAAGGAAGCAGAGGAGCCCAAGAAAGAAGACCCAAAATTCGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTGTACAGCCTTCAACAGCCACCACATCACAGGGCAGTTCATCGCGTAAGGCCACAGGAAAACTTGTCTTTGGCTCTGGTGGTAACCGAGCCGAAAAGgttggtcttttacaatattttgagctcgttgagtccatctacacatgatatggaagtgattaccttatggaactacgccttgatgttccattttgcattaaatgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG