1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AACACACATTAAAGTAACTGAGTTTGTCAGAGACAAAGATTGCCTTGTATGTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttccaatgccaaaacctcaccagtcagtggagaaaaattgttattgcatgagcattttttccaccaggattaccttattaaaattcctcatattc...
species | Zea mays |
transcript | GRMZM2G007915_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGEST: gi|67018949|gb|CO447698.1|CO447698
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATC-AAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAG
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|148940270|gb|EC885046.2|EC885046
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|88749824|gb|DY533965.1|DY533965
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|7119032|gb|AW497574.1|AW497574
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCNTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|5650371|gb|AI920731.1|AI920731
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: CCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|211182135|gb|FL382091.1|FL382091
genomic: CCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|78124195|gb|DV542579.1|DV542579
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|5525843|gb|AI861736.1|AI861736
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|71419961|gb|DR804957.1|DR804957
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|60398591|gb|DN231407.1|DN231407
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|211514449|gb|FL429035.1|FL429035
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|71760307|gb|DR958244.1|DR958244
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|5847480|gb|AW000559.1|AW000559
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|78116519|gb|DV534906.1|DV534906
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|87156356|gb|DY401145.1|DY401145
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|71311092|gb|DR791860.1|DR791860
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|149099068|gb|EE185088.2|EE185088
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|76287586|gb|DV027154.1|DV027154
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|67017410|gb|CO446159.1|CO446159
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|148929148|gb|EC874604.2|EC874604
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|5901235|gb|AW042335.1|AW042335
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|4776276|gb|AI665279.1|AI665279
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|60395495|gb|DN228365.1|DN228365
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCEST: gi|71431173|gb|DR812223.1|DR812223
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
EST: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGAT TTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
genomic: GTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttcca ... tgattgacagTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACACACATTAAAGTAACTGAGTTTGTCAGAGACAAAGATTGCCTTGTATGTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATgtgagttccaatgccaaaacctcaccagtcagtggagaaaaattgttattgcatgagcattttttccaccaggattaccttattaaaattcctcatattc
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