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TTTCCTTTGCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatttagttctctgtctcttacccttcattagtatctcatattctcatgtaccatttgatgtctcatatcctagactaaatattaaaatgtttt...
species | Zea mays |
transcript | GRMZM2G484880_T05 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG CTTGTGAAGCTACCACGATCACCTACTGTTGATGATATTCTAAAGAAGTACEST: gi|60343282|gb|DN210255.1|DN210255
genomic: AAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcagCTTGTGAAGCTACCACGATCACCTACTGTTGATGATATTCTAAAGAAGTAC
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGGTAAGEST: gi|78544095|gb|DV621593.1|DV621593
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGAT--G---Ggtaaggtatt ... tggcct
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGGTAAGEST: gi|60358481|gb|DN225454.1|DN225454
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGAT--G---Ggtaaggtatt ... tggcct
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGG CTTGTGAAGCTACCACGATCACCTACTGTTGATGATATTCTAAAGAAGTACEST: gi|22546503|gb|BU098814.1|BU098814
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatt ... tggcctgcagCTTGTGAAGCTACCACGATCACCTACTGTTGATGATATTCTAAAGAAGTAC
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGGTAAGEST: gi|93284202|gb|EB676466.1|EB676466
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGAT--G---Ggtaaggtatt ... tggcct
EST: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGGTAAG
genomic: GCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGAT--G---Ggtaaggtatt ... tggcct
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCCTTTGCCACTGAAGAAGCAACTTGTGGATGATTGGGAGTTTGTTACGCAGATGGgtaaggtatttagttctctgtctcttacccttcattagtatctcatattctcatgtaccatttgatgtctcatatcctagactaaatattaaaatgtttt
- - - - - - CTGAAG
- - - - - - TGAAGA
- - - - - - - AAGAAG
- - - - - - - - AGAAGC
- - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - CAGATG