1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATTGGCTGATACCCCAGGTATCAAAAGAGGACTCGAATCTCCATCTGCATGGAAGTCTCCTTGGTATATCGATATGCACATGCACTTTCAGgtaaattcattccttttcctttacatcccattttgattttcttgcagccattgtctcataaaataggataaaccttttgcagtcagcttataatcggggg...
species | Zea mays |
transcript | GRMZM2G470307_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TATCGATATGCACATGCACTTTCAG GG-TTTGTCAGCCCAGCAGACAGAACTTATGACGCGTTAGGATTAGTGAATEST: gi|74232895|gb|DT640809.1|DT640809
genomic: TATCGATATGCACATGCACTTTCAGgtaaattcat ... atgtttccagGGTTTTGTCAGCCCAGCAGACAGAACTTATGACGCGTTAGGATTAGTGAAT
EST: CATCTGCATGGAAGTCTCCTTGGTATATCGATATGCACATGCACTTTCAG GGTTTTGTCAGCCCAGCAGACAGAACTTATGACGCGTTAGGAEST: gi|71760578|gb|DR958515.1|DR958515
genomic: CATCTGCATGGAAGTCTCCTTGGTATATCGATATGCACATGCACTTTCAGgtaaattcat ... atgtttccagGGTTTTGTCAGCCCAGCAGACAGAACTTATGACGCGTTAGGA
EST: CATCTGCATGGAAGTCTCCTTGGTATATCGATATGCACATGCACTTTCAG GGTTTTGTCAGCCCAGCAGACAGAACTTATGACGCGTTAGGATTAGTGAAT
genomic: CATCTGCATGGAAGTCTCCTTGGTATATCGATATGCACATGCACTTTCAGgtaaattcat ... atgtttccagGGTTTTGTCAGCCCAGCAGACAGAACTTATGACGCGTTAGGATTAGTGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGCTGATACCCCAGGTATCAAAAGAGGACTCGAATCTCCATCTGCATGGAAGTCTCCTTGGTATATCGATATGCACATGCACTTTCAGgtaaattcattccttttcctttacatcccattttgattttcttgcagccattgtctcataaaataggataaaccttttgcagtcagcttataatcggggg
- - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatagg