1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTCTGTTATGGTTGCTAGAGGTGCTATGTGGAATGCCTCCATCTTTTGTGCCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTATGTAAGAAAGgtatttaattttaccgtcgtgtttgttagaggatgtattattcatttttgtatgggttcaaaacatactgaaacttctatgagtgtctatcaaaacttag...
species | Zea mays |
transcript | GRMZM2G468693_T06 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTATGTAAGAAAG AGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAAEST: gi|74237926|gb|DT645840.1|DT645840
genomic: CCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTATGTAAGAAAGgtatttaatt ... tatatgacagAGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAA
EST: AAGGAAAAACACCTGGGGAGGATGTCAAAAGAGAGTATGTAAGAAAG AGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAAEST: gi|211207814|gb|FL427954.1|FL427954
genomic: AAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTATGTAAGAAAGgtatttaatt ... tatatgacagAGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAA
EST: CCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTATGTAAGAAAG AGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAAEST: gi|211300563|gb|FL370635.1|FL370635
genomic: CCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTATGTAAGAAAGgtatttaatt ... tatatgacagAGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAA
EST: CCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGYATGTAAGAAAG AGCATATTGTGGGACAACGATGYGAAGAGCACGAAACATACCTTGAAAGAAEST: gi|211529896|gb|FL379285.1|FL379285
genomic: CCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTATGTAAGAAAGgtatttaatt ... tatatgacagAGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAA
EST: CCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGNAYGTAAGAAAG AGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAA
genomic: CCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTATGTAAGAAAGgtatttaatt ... tatatgacagAGCATATTGTGGGACAACGATGTGAAGAGCACGAAACATACCTTGAAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTGTTATGGTTGCTAGAGGTGCTATGTGGAATGCCTCCATCTTTTGTGCCAAAGGAAAAACACCTTGGGAGGATGTCAAAAGAGAGTATGTAAGAAAGgtatttaattttaccgtcgtgtttgttagaggatgtattattcatttttgtatgggttcaaaacatactgaaacttctatgagtgtctatcaaaacttag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA