1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAATAAAGAGGATATGATATGCTCCTGTGATAGTGATGGGGAAGTGCGCAGCTGGAGCATAAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAGgtacacggctatcttttatatttcatggggtcatctgcttaatcattaagattttctatgatcatgattttcttcctcaaatcatattttgtcatcccag
species | Zea mays |
transcript | GRMZM2G425377_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCTGGAGCATAAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAG GGAGGTGCTACTCAGATGAGATTTC-ACCTTCGTAAGGGAAAGTATCTAGCEST: gi|78115254|gb|DV533642.1|DV533642
genomic: GCTGGAGCATAAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAGgtacacggct ... gtcatcccagGGAGGTGCTACTCAGATGAGATTTCAACC-TCGTAAGGGAAAGTATCTAGC
EST: GCTGGAGCATAAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAG GGAGGTGCTACTCAGATGAGATTTCAACCTCGTAAGGGAAAGTATCTAGCAEST: gi|78115253|gb|DV533641.1|DV533641
genomic: GCTGGAGCATAAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAGgtacacggct ... gtcatcccagGGAGGTGCTACTCAGATGAGATTTCAACCTCGTAAGGGAAAGTATCTAGCA
EST: AAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAG GGAGGTGCTACTCAGATGAGATTTCAACCTCGTAAGGGAAAGTATCTAGCAEST: gi|160481532|gb|EY254364.1|EY254364
genomic: AAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAGgtacacggct ... gtcatcccagGGAGGTGCTACTCAGATGAGATTTCAACCTCGTAAGGGAAAGTATCTAGCA
EST: GCTGGAGCATAAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAG GGAGGTGCTACTCAGATGAGATTTCAACCTCGTAAGGGAAAGTATC-AGTCEST: gi|60400574|gb|DN233381.1|DN233381
genomic: GCTGGAGCATAAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAGgtacacggct ... gtcatcccagGGAGGTGCTACTCAGATGAGATTTCAACCTCGTAAGGGAAAGTATCTAG-C
EST: TTAAGGTGTTTAAG GGAGGTGCTACTCAGATGAGATTTCAACCTCGTAAGGGAAAGTATCTAGCAEST: gi|60344594|gb|DN211567.1|DN211567
genomic: TTAAGGTGTTTAAGgtacacggct ... gtcatcccagGGAGGTGCTACTCAGATGAGATTTCAACCTCGTAAGGGAAAGTATCTAGCA
EST: AGCATAAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAG GGAGGTGCTACTCAGATGAGATTTCAACCTCGTAAGGGAAAGTATCTAGCA
genomic: AGCATAAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAGgtacacggct ... gtcatcccagGGAGGTGCTACTCAGATGAGATTTCAACCTCGTAAGGGAAAGTATCTAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATAAAGAGGATATGATATGCTCCTGTGATAGTGATGGGGAAGTGCGCAGCTGGAGCATAAATAATGGTAGCTGTTTGACATGTGTTAAGGTGTTTAAGgtacacggctatcttttatatttcatggggtcatctgcttaatcattaagattttctatgatcatgattttcttcctcaaatcatattttgtcatcccag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT