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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGGGAAACTATCCTGTTGGCAGGGATGATGCTTCACAACTCTCTGCTCTGCAAATCTTGGTTGAGATTGGATTCATCGACAATCCTGAGTCCTGCGTgtaagtatttcttaaggtcacacctgatatttcatgccattgccattttcagtatagtgtttatggtggcaacaaaaataatttgcccccctctgttcatttttttttgctctcatcag

Basic information

species Zea mays
transcript GRMZM2G423861_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G423861_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os04g57140.1 (Oryza sativa), 5'ss of exon 7
TTTTGGGAAACTATCCTGTTGGCAGGGATGATGCTTCACAACTCTCTGCTCTGCAAATCTTGGTTGAGATTGGATTCATCGACAATCCTGAGTCCTGCGTgtaagtatttcttaaggtcacacctgatatttcatgccattgccattttcagtat-agtgtttatggtggcaacaaaaataatttgcccccctctgttcatttttttttgctctcatcag
|||| ||||||||||| || || |||||||||||| |||| || |||||||||||||| ||||| || ||||| ||  | |||||||||||||| || ||||||||||||  ||||| |   |||||| |  |||  || |      |  ||| | || | || |      || | | ||  |||       |          |||| |  |||    ||
TTTTAGGAAACTATCCAGTAGGTAGGGATGATGCTGCACAGCTATCTGCTCTGCAAATATTGGTCGAAATTGGCTTTGTTGACAATCCTGAGTCTTGTGTgtaagtattttgtaaggccctgcctgatctcccattgcactcttgaatgtagtctcagcgattgtaacaataagatacatccttttgttttattgacatgaaattttcttgtcttcctag

upper sequence: GRMZM2G423861_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA09G32740.1 (Glycine max), 5'ss of exon 9
TTTTGGGAAACTATCCTGTTGGCAGGGATGATGCTTCACAACTCTCTGCTCTGCAAATCTTGGTTGAGATTGGATTCATCGACAATCCTGAGTCCTGCGTgtaagtatttcttaaggtcacacctgatatt--tcatgccattgccattttcagta-----tagtgtttatggtggcaacaaaaataatttgcccccctctgttcatttttttttgctctcatcag-----------------
|||||||||| || ||| |||| |||||||||||| | || ||||||||  | ||||| |||| ||||||||||||  || |||  || || || |||  || |||  || |||  ||  ||  || ||||    |   |||  |  | || |||      ||   |||||  | |  |   || |  ||     |  | |  |   |  || |  | || ||                    
TTTTGGGAAATTACCCTATTGGAAGGGATGATGCTGCTCAGCTCTCTGCATTACAAATTTTGGCTGAGATTGGATTTCTCAACACACCAGAATCATGCACgttagtgatttttagtgtt-caattgttattaactacttcataacggtgtttagtgccatttaaattttatcctagtgagtgaacttgttaatttctattttctatatccttatgacactgatggagatgctggatttctcag

upper sequence: GRMZM2G423861_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 9
TTTTGGGAAACTATCCTGTTGGCAGGGATGATGCTTCACAACTCTCTGCTCTGCAAATCTTGGTTGAGATTGGATTCATCGACAATCCTGAGTCCTGCGTgtaagtatttcttaaggtcacacctgatat----ttcatgccattgccattttcagtatagtgtttatggtggcaacaaaaataatttgcccccctctgttcatttttttttgctctcatcag-------------------------
||||||| || || ||| |||| |||||||||||| | || || |||||  |||||||||||| ||||||||||||  |    |  ||||| || |||| || |||  || || | ||    | || |||    ||  | ||| |    |||    | |  || ||   ||       |    | ||  |     | | || ||||| | ||||  |  | |                          
TTTTGGGTAATTACCCTATTGGAAGGGATGATGCTGCCCAGCTTTCTGCATTGCAAATCTTGGCTGAGATTGGATTTGTTAGAAGACCTGAATCATGCGCgttagtgattttttatgttcatcttgttataaactttcttccaatagtgtttagcttctcttgattgatgttctggttagggaacttgtcatttttttcttaattttctcttgcgattttaactatttaagatttttgtattgatcag

upper sequence: GRMZM2G423861_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA16G21340.1 (Glycine max), 5'ss of exon 12
TTTTGGGAAACTATCCTGTTGGCAGGGATGATGCTTCACAACTCTCTGCTCTGCAAATCTTGGTTGAGATTGGATTCATCGACAATCCTGAGTCCTGCGTgtaagtatttcttaaggtcacacctgatatt--tcatgccattgccattttcagta------tagtgtttatggtggcaacaaaaataatttgcccccctctgttcatttttttttgctctcatcag------------------
|||||||||| || |||||||| |||||||||||| | || || |||||  | |||||||| | ||||||||||||  |   ||  || || || ||| |||||||   | |||  ||  ||  || ||||    |   |||  |  | || |||       ||   |||||  | |  |   || |  ||     |  | |  |   |  || |  | || |   |                  
TTTTGGGAAATTACCCTGTTGGAAGGGATGATGCTGCTCAGCTTTCTGCCTTACAAATCTTAGCTGAGATTGGATTTCTTAGCACACCAGAATCATGCATgtaagtggcttttagtgtt-catttgttattaactacttcataacagtgtttagtgctattttaaattttatcctagtgaatgaacttgttaatttctattttctatatccttgtgacactgacgggttatgctgtatttctcag

upper sequence: GRMZM2G423861_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 8
TTTTGGGAAACTATCCTGTTGGCAGGGATGATGCTTCACAACTCTCTGCTCTGCAAATCTTGGTTGAGATTGGATTCATCGACAATCCTGAGTCCTGCGTgtaagtatttcttaaggtcacacctgatatttcatgccattgccattttcagtatagtgtttatggtggcaacaaaaataatttgcccccctctgttcatttttttttgctctcatcag
| ||||| || ||||||||||| || ||||||||| ||||||| |||||  |||| || ||| |||||||||||||||| |     || || || |||  || |||  ||||     |  || ||    || || |        ||||    | | || ||| |       |||  | | ||   |     | |  | |||||||              
TATTGGGCAATTATCCTGTTGGAAGAGATGATGCTGCACAACTATCTGCATTGCAGATTTTGATTGAGATTGGATTCATTGGTTGCCCAGAATCATGCACgttagtgattctagttatttcatcttgatttgcagg--------atttattctgttgtttttttttctattacagtagtgatacacaatattattattattttttggc-----------