1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCTCCAAGGTTCAGTTTCTACGATGCTGACAAACCAATGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAGgtgttatgccgtctatctgtactaaaatgagtcatcacattgtccttttttgcactatattatattatttatttcacgtttgttattaattattagtaccatggttccctgcctttgcttacttattttgatacttggggcattcatttatcctatctggttaatgtgtccccttctaacacgttggtgtcactgcag
species | Zea mays |
transcript | GRMZM2G391936_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAG ATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATAEST: gi|71324302|gb|DR798853.1|DR798853
genomic: TGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAGgtgttatgcc ... gtcactgcagATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATA
EST: GGAGAAACCTACCACCATCTATGGTCAACAATAGTAAG ATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATAEST: gi|24763417|gb|CA398592.1|CA398592
genomic: GGAGAAACCTACCACCATCTATGGTCAACAATAGTAAGgtgttatgcc ... gtcactgcagATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATA
EST: TCTATGGTCAACAATAGTAAG ATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATAEST: gi|93281647|gb|EB673911.1|EB673911
genomic: TCTATGGTCAACAATAGTAAGgtgttatgcc ... gtcactgcagATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATA
EST: GGTCAACAATAGTAAG ATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATAEST: gi|211232745|gb|FL322840.1|FL322840
genomic: GGTCAACAATAGTAAGgtgttatgcc ... gtcactgcagATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATA
EST: TGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAG ATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATAEST: gi|110195335|gb|EC877232.1|EC877232
genomic: TGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAGgtgttatgcc ... gtcactgcagATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATA
EST: TGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAG ATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATAEST: gi|18178292|gb|BM379502.1|BM379502
genomic: TGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAGgtgttatgcc ... gtcactgcagATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATA
EST: GGAGAAACCTACCACCATCTATGGTCAACAATAGTAAG ATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATAEST: gi|71429962|gb|DR811012.1|DR811012
genomic: GGAGAAACCTACCACCATCTATGGTCAACAATAGTAAGgtgttatgcc ... gtcactgcagATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATA
EST: TGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAG ATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATAEST: gi|71323466|gb|DR798382.1|DR798382
genomic: TGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAGgtgttatgcc ... gtcactgcagATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATA
EST: TGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAG ATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATAEST: gi|32850355|gb|CD990036.1|CD990036
genomic: TGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAGgtgttatgcc ... gtcactgcagATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATA
EST: TGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAG ATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATAEST: gi|31348918|gb|CD433275.1|CD433275
genomic: TGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAGgtgttatgcc ... gtcactgcagATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATA
EST: CCACCATCTATGGTCAACAATAGTAAG ATCACTGATTCTATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATAEST: gi|50335821|gb|CO530947.1|CO530947
genomic: CCACCATCTATGGTCAACAATAGTAAGgtgttatgcc ... gtcactgcagATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATA
EST: TGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAG ATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATAEST: gi|31362917|gb|CD447274.1|CD447274
genomic: TGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAGgtgttatgcc ... gtcactgcagATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATA
EST: TGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAG ATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATAEST: gi|78103575|gb|DV522003.1|DV522003
genomic: TGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAGgtgttatgcc ... gtcactgcagATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATA
EST: TGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAG ATCACTGATTCAATCATTGCCCACGGATGTTTCTTGGATAACTGCAGGATA
genomic: TGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAGgtgttatgcc ... gtcactgcagATCACTGATTCAATCATTTCCCACGGATGTTTCTTGGATAACTGCAGGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCCAAGGTTCAGTTTCTACGATGCTGACAAACCAATGTATACATCACGGAGAAACCTACCACCATCTATGGTCAACAATAGTAAGgtgttatgccgtctatctgtactaaaatgagtcatcacattgtccttttttgcactatattatattatttatttcacgtttgttattaattattagtaccatggttccctgcctttgcttacttattttgatacttggggcattcatttatcctatctggttaatgtgtccccttctaacacgttggtgtcactgcag
- - - - - - - - - - - - - - - - - - - - - - - - GGAGAA