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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAAATGAATTCTGCTGCAAGCAATGGCATCAACGATACTGAGGGAGGACGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTTgtgagtggtcccttctagttatcacatttgatgtaattctgttatgcttcaggttcttacgcttggagtagttcatgatagtaatggaacccatgatctt...

Basic information

species Zea mays
transcript GRMZM2G381933_T04
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33285569|gb|CF075364.1|CF075364
EST:     CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTT                         GTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
genomic: CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTTgtgagtggtc ... gattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
EST: gi|78087486|gb|DV515879.1|DV515879
EST:     CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTT                         GTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
genomic: CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTTgtgagtggtc ... gattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
EST: gi|67023704|gb|CO452453.1|CO452453
EST:     CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTT                         GTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
genomic: CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTTgtgagtggtc ... gattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
EST: gi|33285805|gb|CF075600.1|CF075600
EST:     CGGCATCAATCATTGTAGTCGGTGATGAAATTTT                         GTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
genomic: CGGCATCAATCATTGTAGTCGGTGATGAAATTTTgtgagtggtc ... gattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
EST: gi|33770862|gb|CF273156.1|CF273156
EST:     CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTT                         GTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA
genomic: CGGATGATCTCACGGGCGGCATCAATCATTGTAGTCGGTGATGAAATTTTgtgagtggtc ... gattcttcagGTTTGGTACAACTGAGGATAACTTAGGAGCAGCCTTGTGCAAGAAGCTTCA