1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCTGATGGTTCTGAAAATCAGCTCGAAGTTTGAACTAAGAAGGTTCTGCCGTACTACTGGGGCTGTTGCAATTgtaagttctgattttacagatgtatttgttcctgtgtcgtggtagcattcttaaatacttattctgataatctgattttggtttttgtgtttttgaattatatag
species | Zea mays |
transcript | GRMZM2G381744_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CGAAGTTTGAACTAAGAAGGTTCTGCCGTACTACTGGGGCTGTTGCAATT TTGAAACTTAGCCAACCCAATGCGGACGAACTAGGATACGCAGATTCTGTTEST: gi|9794809|gb|BE553117.1|BE553117
genomic: CGAAGTTTGAACTAAGAAGGTTCTGCCGTACTACTGGGGCTGTTGCAATTgtaagttctg ... aattatatagTTGAAACTTAGCCAACCCAATGCGGACGAACTAGGATACGCAGATTCTGTT
EST: CGAAGTTTGAACTAAGAAGGTTCTGCCGTACTACTGGGGCTGTTGCAATT TTGAAACTTAGCCAACCCAATGCGGACGAACTAGGATACGCAGATTCTGTTEST: gi|32919903|gb|CF024715.1|CF024715
genomic: CGAAGTTTGAACTAAGAAGGTTCTGCCGTACTACTGGGGCTGTTGCAATTgtaagttctg ... aattatatagTTGAAACTTAGCCAACCCAATGCGGACGAACTAGGATACGCAGATTCTGTT
EST: GGGGCTGTTGCAATT TTGAAACTTAGCCAACCCAATGCGGACGAACTAGGATACGCAGATTCTGTTEST: gi|60347495|gb|DN214468.1|DN214468
genomic: GGGGCTGTTGCAATTgtaagttctg ... aattatatagTTGAAACTTAGCCAACCCAATGCGGACGAACTAGGATACGCAGATTCTGTT
EST: CGAAGTTTGAACTAAGAAGGTTCTGCCGTACTACTGGGGCTGTTGCAATT TTGAAACTTAGCCAACCCAATGCGGACGAACTAGGATACGCAGATTCTGTT
genomic: CGAAGTTTGAACTAAGAAGGTTCTGCCGTACTACTGGGGCTGTTGCAATTgtaagttctg ... aattatatagTTGAAACTTAGCCAACCCAATGCGGACGAACTAGGATACGCAGATTCTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGATGGTTCTGAAAATCAGCTCGAAGTTTGAACTAAGAAGGTTCTGCCGTACTACTGGGGCTGTTGCAATTgtaagttctgattttacagatgtatttgttcctgtgtcgtggtagcattcttaaatacttattctgataatctgattttggtttttgtgtttttgaattatatag
- - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT