Sequence
atgc intronic sequence ATGC exonic sequenceTGTAGGCCCTGATGGGAAGATAAAGGAGCCTGAGAGCAATGTACTTTTAGCATCAATTGAGAACATGCAATATGCTGTGACGGTGGATGTTCTGCACACTgtaagaataacccagtaccttttgtttatttcaaataaagagctgacatgaaagcaagctgtatagttacattaatgtgataatttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G178169_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g33830.1 (Oryza sativa), 5'ss of exon 7
TGTAGGCCCTGATGGGAAGATAAAGGAGCCTGAGAGCAATGTACTTTTAGCATCAATTGAGAACATGCAATATGCTGTGACGGTGGATGTTCTGCACACTgtaagaataacccagtaccttttgtttatttcaaataaag-agctgacatgaaagcaag----ctgtatagttacattaatgtgataatttcag
| |||||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||||| || |||||||| ||| | | || | | | || | | || | || | ||| | |||| | | ||| || |||||||||||
TTTAGGCCCTGATGGGAAGATAAAGGAGCCTGAGAGCAATGTGCTTTTGGCTTCAATAGAGAACATGCAGTATGCTGTGACGGTGGATGTTCTACATACTgtaagtatatttta----ttcttactgactccaggtgttttatctaaaataaggacaaaattagtatataatcatgtta-tgagataatttcag
upper sequence: GRMZM2G178169_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA18G49580.1 (Glycine max), 5'ss of exon 7
TGTAGGCCCTGATGGGAAGATAAAGGAGCCTGAGAGCAATGTACTTTTAGCATCAATTGAGAACATGCAATATGCTGTGACGGTGGATGTTCTGCACACTgtaagaataacccagtaccttttgtttatttcaaataaagagctgacatgaaagcaagctgtatagttacattaatgtgataatttcag---
||||||||||||||||||| || || ||||| |||||||| ||||| || || ||||| || ||||| |||||||| || || ||||| || ||||| || ||||| || | ||| || ||| | | || || ||| | | || | |||| | || || || |
-GTAGGCCCTGATGGGAAGAGGAAAGAACCTGACAGCAATGTGCTTTTGGCTTCCATTGAAAATATGCAGTATGCTGTTACTGTTGATGTCCTCCACACGGtgagaat-----------ttgtattt-ttctgcttaatgtccaaacctgtaagtgatttataatctcacatcactggtctatctttacagg
upper sequence: GRMZM2G178169_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA09G37080.1 (Glycine max), 5'ss of exon 8
TGTAGGCCCTGATGGGAAGATAAAGGAGCCTGAGAGCAATGTACTTTTAGCATCAATTGAGAACATGCAATATGCTGTGACGGTGGATGTTCTGCACACTgtaagaataacccagtaccttttgtttatttcaaataaagagctgacatgaaagcaagctgtatagttacattaatgtgataatttcag--
|||||||||||||||||||| || || |||||||||||||| ||||| || || ||||| || ||||| |||||||| || || ||||| || ||||| || ||||| | | ||| | | || | || | | | || ||| | | || | |||| | | || || |
TGTAGGCCCTGATGGGAAGAGGAAAGAACCTGAGAGCAATGTGCTTTTGGCTTCCATTGAAAATATGCAGTATGCTGTTACTGTTGATGTCCTCCACACGgtgagaat-------ttgcatttttctgcttaatatccaaa-----cctgtaagtgatttataatctcacatcaccggtctatctttacag
upper sequence: GRMZM2G178169_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT3G01150.2 (Arabidopsis thaliana), 5'ss of exon 5
TGTAGGCCCTGATGGGAAGATAAAGGAGCCTGAGAGCAATGTACTTTTAGCATCAATTGAGAACATGCAATATGCTGTGACGGTGGATGTTCTGCACACTgtaag----aataacccagtaccttttgtttatttcaaataaagagctgacatgaaagcaagctgtatagttacattaatgtgataatttcag
| |||| |||| || |||| | || || ||||||| || ||| | | | |||||||| ||||| |||||||| || ||||||||||| ||||| ||||| || | | | || ||| | | || || ||| | | | || ||
TTTAGGTGCTGACGGCAAGAAAGTTGAATCTCAGAGCAACGTCCTTCTCGGTTTGATTGAGAATATGCAGTATGCTGTCACTGTGGATGTTCTTCACACGgtaaggaacaacagtcatgcacatttctgcttctaagcattcttagtctctcaaaaataacatcctttgcttctcatag--------------
upper sequence: GRMZM2G178169_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv14s0108g01030.t01 (Vitis vinifera), 5'ss of exon 7
TGTAGGCCCTGATGGGAAGATAAAGGAGCCTGAGAGCAATGTACTTTTAGCATCAATTGAGAACATGCAATATGCTGTGACGGTGGATGTTCTGCACACTgtaagaataacccagtaccttttgtttatttcaaataaagagctgac---atgaaagcaagctgtatagttacattaatgtgataatttcag
| |||| |||||||| |||| ||| || |||||||| ||||| ||| | || ||||||||||| |||||||||||||| || || |||||||| ||||| || || ||| | || | | ||| | ||| | | | || | | || || | | |||||||
TTTAGGTCCTGATGGCAAGAAAAAAGAACCTGAGAGTAATGTTCTTCTTGCTTCAATTGAGAATATGCAATATGCTGTTACAGTAGATGTTCTTCACACGgtgag--taattc--tatttatgatttcctccaatgatcttttttatcatgtgggatgtactcatactgtgatgtcggatcacctatttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6626417|gb|AW257949.1|AW257949EST: CATCAATTGAGAACATGCAATATGCTGTGACGGTGGATGTTCTGCACACT GTGTTTTCTGCTTTTGGTGCTGTTCAAAAAATTGCCATGTTTGAGAAGAAT
genomic: CATCAATTGAGAACATGCAATATGCTGTGACGGTGGATGTTCTGCACACTgtaagaataa ... ataatttcagGTGTTTTCTGCTTTTGGTGCTGTTCAAAAAATTGCCATGTTTGAGAAGAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTAGGCCCTGATGGGAAGATAAAGGAGCCTGAGAGCAATGTACTTTTAGCATCAATTGAGAACATGCAATATGCTGTGACGGTGGATGTTCTGCACACTgtaagaataacccagtaccttttgtttatttcaaataaagagctgacatgaaagcaagctgtatagttacattaatgtgataatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA