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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATGTTGGCAATCTATCTCCCAAGgttgctttctctgctgtgcggtttcattaaacttgtatgcgttgtcttgttagctttacatgctatggtgttag

Basic information

species Zea mays
transcript GRMZM2G174785_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174785_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g08360.1 (Oryza sativa), 5'ss of exon 7
ACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATGTTGGCAATCTATCTCCCAAGgttg-ctttctctgctgtgc--ggtttcattaaactt---gtatgcgttgtcttg---ttagctttaca-tgctatggtgttag-------
||||||||||||||| ||||| | ||||| | |||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| ||||| ||||||| | |||||   || ||  | |||  ||| || |   ||   | ||   |     ||| ||| |   |   ||  | |||        
ACTACCAGATGAATTAGATCCCATTGGGAAACTTCCAGGATCATTTGATGATGGGGATCCACAAACCACGAACTTATATGTTGGGAATCTTTCTCCTAAGgttggcattctccaatgcgcttgttttgtttatacataaggttaactttacatcatgattaacttgatggttgcattatattatatgacag

upper sequence: GRMZM2G174785_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA08G34030.2 (Glycine max), 5'ss of exon 7
ACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATGTTGGCAATCTATCTCCCAAGgtt-----gctttctctgctgtgcggtttcattaaactt--gtatgcgttgtcttgttagctttacat-gctatggtgttag------
 || || ||||| ||||| || | ||| | | |||||||||||||||||||||||||||||||||| || ||  | |||||||| ||||| || |||||||||     |    |||        || ||  ||   |||  | |      | | ||||||  | || | |  |   | |||       
GCTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGgttagagtgtcccctcaataaatgggctttgttgttctttgggaattaaggacatgttagtctcaccttggcagttttttaattgtag

upper sequence: GRMZM2G174785_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA16G15820.1 (Glycine max), 5'ss of exon 3
ACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATGTTGGCAATCTATCTCCCAAGgt-----tgctttctctgctgtgcggtttcattaaacttgtatgcgtt---gtcttgttagcttta-cat-gctatggtgttag-----
 || || ||||| ||||| || | ||| | | |||||||||||||||||||||||||||||||||| || ||  | |||||||| ||||| || ||||||||     ||    |||    |   |  ||  ||   ||| |  |  ||   |   ||||||  | | ||| ||  |  ||| |      
GCTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGgtcagagtgtcccctcaatagatggactttgttgttctt-tgagaattaaggagatgttagtctcatcatcgcagttttgtaattgtag

upper sequence: GRMZM2G174785_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv04s0008g06810.t01 (Vitis vinifera), 5'ss of exon 6
ACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATGTTGGCAATCTATCTCCCAAGgttgctttctctgctgtgcggt-ttcattaaacttgtatgcgttgtcttgttagctttacatgc-tatggtgttag------------------------------
 || || ||||| |||||||||| ||| |   |||| ||||||||||||||||||||||| ||||| || ||  | |||||||| ||||| || ||  ||||||| |||     | |  | |  ||| |   ||  ||| | ||  ||  |||    |   ||    ||     |                               
GCTGCCTGATGACTTTGATCCGAGTGGAAAGCTTCCTGGATCATTTGATGATGGTGATCCACAAACTACTAATCTCTATGTTGGAAATCTCTCACCACAGgttgcattcctaatttttggatgctcaattctctgttattcttttactctttaatgctctttggacctgaaaccaacaaaatataatctgtttttattttttatag