1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGGGTAAGGATGTCGTATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacctcttgacttaaatcgctcagattgctctattgctattcaatttgctactccatatcctgatcacaatccactcaaaaatccattgtag
species | Zea mays |
transcript | GRMZM2G158479_T04 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCCEST: gi|14244836|gb|BG842774.2|BG842774
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCCEST: gi|166544398|gb|EG296822.1|EG296822
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGEST: gi|67028963|gb|CO457712.1|CO457712
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCG
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGA-AAAGCTG ATGGGAGTGAA-TGGATCTT-CTACTEST: gi|16379087|gb|BI992745.1|BI992745
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACT
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCCEST: gi|15323508|gb|BI478611.1|BI478611
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCCEST: gi|60338899|gb|DN205872.1|DN205872
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCCEST: gi|211036752|gb|FL261404.1|FL261404
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCCEST: gi|74245922|gb|DT653836.1|DT653836
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCCEST: gi|91054777|gb|EB165195.1|EB165195
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTTTACTATCACTAGCGCTTCTCCAAGCTGTCEST: gi|76283401|gb|DV022969.1|DV022969
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCCEST: gi|16919521|gb|BM074230.1|BM074230
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCCEST: gi|15590213|gb|BI674829.1|BI674829
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCCEST: gi|31356905|gb|CD441262.1|CD441262
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCCEST: gi|60396397|gb|DN229266.1|DN229266
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTTTACTATCACTAGCGTTTCTCCAAGCTGCCEST: gi|14243082|gb|BG840790.2|BG840790
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCCEST: gi|149097934|gb|EE183875.2|EE183875
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCCEST: gi|6012601|gb|AW062038.1|AW062038
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCCEST: gi|31354314|gb|CD438671.1|CD438671
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCCEST: gi|18163834|gb|BM333673.1|BM333673
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCCEST: gi|78075104|gb|DV503538.1|DV503538
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCCEST: gi|40303643|gb|CK348030.1|CK348030
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
EST: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTG ATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
genomic: TATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacct ... tccattgtagATGGGAGTGAAATGGATCTTTCTACTATCACTAGCGCTTCTCCAAGCTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGGTAAGGATGTCGTATCATTCCTTTCGTGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAGCTGgtaacaacctcttgacttaaatcgctcagattgctctattgctattcaatttgctactccatatcctgatcacaatccactcaaaaatccattgtag
- - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG