1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTGATTAGTGGTGTCACATGTGATGCTCCATATGAATGGTTGGACAAGACTGACTCAGAATGGGAGTTCAAGAGGGATCAGTCAAGTGAAACTTTTCATgtcagtattgacactatttcctacatgtccaacatgaatattgtacatgatattcacttcatttcttttgtag
species | Zea mays |
transcript | GRMZM2G147450_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGACTCAGAATGGGAGTTCAAGAGGGATCAGTCAAGTGAAACTTTTCAT GTGGTTGCCTATGACTTTGGTATCAAGCATAATATTTTGAGACGATTGGCAEST: gi|26457213|gb|CA828796.1|CA828796
genomic: CTGACTCAGAATGGGAGTTCAAGAGGGATCAGTCAAGTGAAACTTTTCATgtcagtattg ... tcttttgtagGTGGTTGCCTATGACTTTGGTATCAAACATAATATTTTGAGACGATTGACA
EST: CTGACTCAGAATGGGAGTTCAAGAGGGATCAGTCAAGTGAAACTTTTCAT GTGGTTGCCTATGACTTTGGTATCAAGCATAATATTTTGAGACGATTGGCAEST: gi|20301382|gb|BQ164325.1|BQ164325
genomic: CTGACTCAGAATGGGAGTTCAAGAGGGATCAGTCAAGTGAAACTTTTCATgtcagtattg ... tcttttgtagGTGGTTGCCTATGACTTTGGTATCAAACATAATATTTTGAGACGATTGACA
EST: CTGACTCAGAATGGGAGTTCAAGAGGGATCAGTCAAGTGAAACTTTTCAT GTGGTTGCCTATGACTTTGGTATCAAGCATAATATTTTGAGACGATCGGCAEST: gi|21760053|gb|BQ635594.1|BQ635594
genomic: CTGACTCAGAATGGGAGTTCAAGAGGGATCAGTCAAGTGAAACTTTTCATgtcagtattg ... tcttttgtagGTGGTTGCCTATGACTTTGGTATCAAACATAATATTTTGAGACGATTGACA
EST: AGAATGGGAGTTCAAGAGGGATCAGTCAAGTGAAACTTTTCAT GCTGGTTGCCTATGCACTTTGGTATCAAGCATAATATTTTGAGACGATTGGEST: gi|116818541|gb|EC861576.1|EC861576
genomic: AGAATGGGAGTTCAAGAGGGATCAGTCAAGTGAAACTTTTCATgtcagtattg ... tcttttgtagG-TGGTTGCCTATG-ACTTTGGTATCAAACATAATATTTTGAGACGATTGA
EST: AGAGGGATCAGTC-AGTGAAACTTTTCAT GTGGTTGCCTATGACTTTGGTATCAAACATAATATTTTGAGACGATTGACG
genomic: AGAGGGATCAGTCAAGTGAAACTTTTCATgtcagtattg ... tcttttgtagGTGGTTGCCTATGACTTTGGTATCAAACATAATATTTTGAGACGATTGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGATTAGTGGTGTCACATGTGATGCTCCATATGAATGGTTGGACAAGACTGACTCAGAATGGGAGTTCAAGAGGGATCAGTCAAGTGAAACTTTTCATgtcagtattgacactatttcctacatgtccaacatgaatattgtacatgatattcacttcatttcttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG